Locus 105

Sequence ID pao.1076
Location 1,937,925 – 1,937,985
Length 60
Max. P 0.776638
window518

overview

Window 8

Location 1,937,925 – 1,937,985
Length 60
Sequences 6
Columns 61
Reading direction forward
Mean pairwise identity 66.03
Mean single sequence MFE -16.27
Consensus MFE -5.03
Energy contribution -4.78
Covariance contribution -0.25
Combinations/Pair 1.57
Mean z-score -2.03
Structure conservation index 0.31
SVM decision value 0.54
SVM RNA-class probability 0.776638
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1076 1937925 60 + 6264404
GGAAACUCGACGCAAAGUUAAGUCGGAAACCCUAG-GAACCACAGGGUGAACUUGAUUAGA
(....).........((((((((.....(((((.(-......))))))..))))))))... ( -13.20)
>ppk.1364 2672612 59 + 6181863
GUAAAAAAAGCCUGAAGGUAAGGCGGU--GUUCAUGACUUUAACGAGUGACCCUGGUUAGA
.........((((.......))))...--.........((((((.((.....)).)))))) ( -10.60)
>pst.2228 2158182 58 - 6397126
CCAAAACUUCGCUAAAGGUAAGUUAGC--CCCUAC-AUCUUCGGGGGUGAACUUGCUUAGA
...............(((((((((.((--((((..-......)))))).)))))))))... ( -20.30)
>pss.1020 1961815 58 + 6093698
CCAAAACUUUGCCAAAGGUAAGUUAGC--CCCUAC-AUCUUCGGGGGUGAACUUGCUUAGA
...............(((((((((.((--((((..-......)))))).)))))))))... ( -20.30)
>psp.2080 1835424 58 - 5928787
CCAAAACUUCGCUAAAGGUAAGUUAGC--CCCUAC-AUCUUCGGGGGUGAACUUGCUUAGA
...............(((((((((.((--((((..-......)))))).)))))))))... ( -20.30)
>pel.1082 2001748 59 + 5888780
GCAAAAAUCAGCCGAAGGUAAGGCGGC--GAAGAUGACUUUAACGGGUGACCCUGGUUAGA
.....((((((((........)))(..--((((....))))..)((....)).)))))... ( -12.90)
>consensus
CCAAAACUUAGCCAAAGGUAAGUCAGC__CCCUAC_AUCUUAGGGGGUGAACUUGCUUAGA
...............((((((((((....((((..........)))))).))))))))... ( -5.03 =  -4.78 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:41 2007