| Sequence ID | pao.2621 |
|---|---|
| Location | 4,939,187 – 4,939,299 |
| Length | 112 |
| Max. P | 0.948847 |
| Location | 4,939,187 – 4,939,299 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 83.39 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -20.35 |
| Energy contribution | -21.85 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2621 4939187 112 + 6264404 GGCUUUGGCCGCUUAAGCGCUGACUGCGAACUGUUUUCAACAAUGGCCGGCGAUGAUAGCAGAACCGGCCUUUGCUGAACACCAAUCACAUCUCUACUCCUGAUUAAUUACU .((.(..((.((....))))..)..))((...((.((((.(((.((((((...((....))...)))))).))).)))).))...))......................... ( -28.30) >pau.2708 5102745 112 + 6537648 GGCUUUGGCCGCUUAAGCGCUGACUGCGAACUGUUUUCAACAAUGGCCGGCGAUGAUAGCAGAACCGGCCUUUGCUGAACACCAAUCACAUCUCUACUCCUGAUUAAUUACU .((.(..((.((....))))..)..))((...((.((((.(((.((((((...((....))...)))))).))).)))).))...))......................... ( -28.30) >pf5.3090 5816678 107 + 7074893 --CUUGGGCCGCUUCAGCGCAAAUUGCGAACUGGUAUCAACAAAGGCUGGCGAUAAUAGCAGACCAUGCCUUUGCUGAACACCAAUCACCCUAAUACCCCUGAUGCAUU--- --........((.(((((((.....)))...((((.(((.(((((((((((..........).))).))))))).)))..))))...............)))).))...--- ( -29.70) >pel.2582 4793011 105 + 5888780 ----UUGGCCGCUUCAGCGCAAAUUGCGAACAGGUAUCAACAAAGGCUGGGGAUGAUAACAGACCCGGCCUUUGCUGAACACCAAUCACCCUAAUACCCCUGAUAAAUU--- ----.........(((((((.....)))....(((.(((.(((((((((((..((....))..))))))))))).)))..)))................))))......--- ( -34.90) >ppk.756 4651585 105 - 6181863 ----UUGGCCGCUUCAGCGCAAAUUGCGAACAGGUAUCAACAAAGGCUGGGGAUGAUAACAGACCCAACCUUUGAUGAAUACCAAUCACCUUUAUACCCCUGAUAAAUU--- ----.........(((((((.....)))....(((((((.((((((.((((..((....))..)))).)))))).)).)))))................))))......--- ( -31.30) >pfo.2778 5269215 105 + 6438405 ----UGGGCCGCUUCAGCGCAAAUUGCGAACUGGUAUCAACAAAGGCUGGCGAUGAUAGCAGACCGAGCCUUUGCUGAACACCAAUCACCUGAAUACCCCUGAUACAUU--- ----.(((....((((((((.....)))...((((.(((.((((((((((...((....))..)).)))))))).)))..)))).....)))))...))).........--- ( -31.30) >consensus ____UUGGCCGCUUCAGCGCAAAUUGCGAACUGGUAUCAACAAAGGCUGGCGAUGAUAGCAGACCCGGCCUUUGCUGAACACCAAUCACCUUAAUACCCCUGAUAAAUU___ ....((((..(((....(((.....)))....))).(((.((((((((((...((....))...)))))))))).)))...))))........................... (-20.35 = -21.85 + 1.50)
| Location | 4,939,187 – 4,939,299 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.39 |
| Mean single sequence MFE | -40.88 |
| Consensus MFE | -32.70 |
| Energy contribution | -34.40 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.35 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.948847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2621 4939187 112 - 6264404 AGUAAUUAAUCAGGAGUAGAGAUGUGAUUGGUGUUCAGCAAAGGCCGGUUCUGCUAUCAUCGCCGGCCAUUGUUGAAAACAGUUCGCAGUCAGCGCUUAAGCGGCCAAAGCC ............((....((..(((((...((.((((((((.(((((((..((....))..))))))).)))))))).))...))))).))..(((....))).))...... ( -38.40) >pau.2708 5102745 112 - 6537648 AGUAAUUAAUCAGGAGUAGAGAUGUGAUUGGUGUUCAGCAAAGGCCGGUUCUGCUAUCAUCGCCGGCCAUUGUUGAAAACAGUUCGCAGUCAGCGCUUAAGCGGCCAAAGCC ............((....((..(((((...((.((((((((.(((((((..((....))..))))))).)))))))).))...))))).))..(((....))).))...... ( -38.40) >pf5.3090 5816678 107 - 7074893 ---AAUGCAUCAGGGGUAUUAGGGUGAUUGGUGUUCAGCAAAGGCAUGGUCUGCUAUUAUCGCCAGCCUUUGUUGAUACCAGUUCGCAAUUUGCGCUGAAGCGGCCCAAG-- ---..........((((......(((((((((((.((((((((((.((((...........))))))))))))))))))))).))))......(((....)))))))...-- ( -42.60) >pel.2582 4793011 105 - 5888780 ---AAUUUAUCAGGGGUAUUAGGGUGAUUGGUGUUCAGCAAAGGCCGGGUCUGUUAUCAUCCCCAGCCUUUGUUGAUACCUGUUCGCAAUUUGCGCUGAAGCGGCCAA---- ---...........(((......((((..(((((.((((((((((.(((..((....))..))).)))))))))))))))...))))......(((....))))))..---- ( -41.30) >ppk.756 4651585 105 + 6181863 ---AAUUUAUCAGGGGUAUAAAGGUGAUUGGUAUUCAUCAAAGGUUGGGUCUGUUAUCAUCCCCAGCCUUUGUUGAUACCUGUUCGCAAUUUGCGCUGAAGCGGCCAA---- ---...........(((......((((..(((((.((.(((((((((((..((....))..))))))))))).)))))))...))))......(((....))))))..---- ( -39.40) >pfo.2778 5269215 105 - 6438405 ---AAUGUAUCAGGGGUAUUCAGGUGAUUGGUGUUCAGCAAAGGCUCGGUCUGCUAUCAUCGCCAGCCUUUGUUGAUACCAGUUCGCAAUUUGCGCUGAAGCGGCCCA---- ---..........((((.(((((..(((((((((.(((((((((((.(((.((....))..)))))))))))))))))))))))(((.....))))))))...)))).---- ( -45.20) >consensus ___AAUUUAUCAGGGGUAUAAAGGUGAUUGGUGUUCAGCAAAGGCCGGGUCUGCUAUCAUCGCCAGCCUUUGUUGAUACCAGUUCGCAAUUUGCGCUGAAGCGGCCAA____ ............((.........(((((((((((.((((((((((((((..((....))..))))))))))))))))))))).))))......(((....))).))...... (-32.70 = -34.40 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:30 2007