Locus 10

Sequence ID pao.3201
Location 6,042,362 – 6,042,482
Length 120
Max. P 0.815058
window60

overview

Window 0

Location 6,042,362 – 6,042,482
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.33
Mean single sequence MFE -38.20
Consensus MFE -39.56
Energy contribution -35.60
Covariance contribution -3.96
Combinations/Pair 1.43
Mean z-score -0.91
Structure conservation index 1.04
SVM decision value 0.66
SVM RNA-class probability 0.815058
Prediction RNA

Download alignment: ClustalW | MAF

>pao.3201 6042362 120 - 6264404
ACGGGGAUUAGCCCUUAAGCUUCAUUGAUUUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACGCGAAAGGAUCUUUGAAGUGAAAUCGAGUAGGACGGAGCA
.(((((.....)))....((((((..((((((.((((..(((.((....)).)))..)...(.((((....)))))...)))...))))))..))))))..............))..... ( -35.60)
>pau.3340 6315281 120 - 6537648
ACGGGGAUUAGCCCUUAAGCUUCAUUGAUUUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACGCGAAAGGAUCUUUGAAGUGAAAUCGAGUAGGACGGAGCA
.(((((.....)))....((((((..((((((.((((..(((.((....)).)))..)...(.((((....)))))...)))...))))))..))))))..............))..... ( -35.60)
>pel.69 5770896 120 + 5888780
ACGGGGACCAGCCCUUAAGCUGGUUUGAGAUUAGUGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACACGAAAAUCUCUUGCCAGUGAAAUCGAGUAGGACGGAGCA
.(((((.....)))....((((((..((((((.((((..(((.((....)).)))..)...(.((((....)))))...)))...))))))..))))))..............))..... ( -39.40)
>psp.1833 3634235 120 - 5928787
ACGGGGACCAGCCCUUAAGUUGUAUUGAGAUUAGCGGAACGUUCUGGAAAGGACGGCCAUAGUGGGUGAUAGCCCUGUACGCGAAAAUCCCUUUGCAAUGAAAUCGAGUAGGACGGGGCA
..(....)..(((((...(((.((((..((((.((((..((((((....)))))).)).....((((....)))).))..(((((......))))).....)))).)))).)))))))). ( -37.20)
>pf5.3378 6385520 120 - 7074893
ACGGGGACUAGCCCUUAAGUGGCUUUGAGAUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCUGUACGCGAAAAUCUCUUAGUCAUGAAAUCGAGUAGGACGGGGCA
..(....)..(((((...((((((..((((((.((((..(((.((....)).)))..).....((((....))))....)))...))))))..))))))....((......)).))))). ( -42.40)
>pfo.3002 5729140 120 - 6438405
ACGGGGACUAGCCCUUAAGUGGCUUUGAGAUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCUGUACGCGAAAGUCUCUUAGUCAUGAAAUCGAGUAGGACGGAGCA
((((((.(((((((....(((((((((.......)))).(((.((....)).))))))))...))))..)))))))))..((....((((..((.((........)).))))))...)). ( -39.00)
>consensus
ACGGGGACUAGCCCUUAAGCUGCAUUGAGAUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACGCGAAAAUCUCUUUGAAAUGAAAUCGAGUAGGACGGAGCA
.(((((.....)))....((((((..((((((.((((..(((.((....)).)))..).....((((....))))....)))...))))))..))))))..............))..... (-39.56 = -35.60 +  -3.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:04:20 2007