| Sequence ID | pao_1 |
|---|---|
| Location | 5,284,256 – 5,284,313 |
| Length | 57 |
| Max. P | 0.999861 |
| Location | 5,284,256 – 5,284,313 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 89.43 |
| Mean single sequence MFE | -20.12 |
| Consensus MFE | -19.03 |
| Energy contribution | -19.53 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.97 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.29 |
| SVM RNA-class probability | 0.999861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 5284256 57 + 1 UUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUC-GACCCGGCACUUUGCCGGGUC ....(((((...(((....))).)))))........-((((((((.....)))))))) ( -20.90) >pel_1 1 57 + 1 -UCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUAUUGACCCGGCAACUUGCCGGGUC -...(((((...(((....))).))))).........((((((((.....)))))))) ( -20.60) >pf5_1 1 54 + 1 ----GAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCUUUUUGCCGGGUC ----(((((...(((....))).))))).........((((((((.....)))))))) ( -20.60) >pfo_1 1 51 + 1 -------UAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCUUUUUGCCGGGUC -------............(((((......)))))..((((((((.....)))))))) ( -17.20) >ppk_1 1 57 + 1 -UCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUAUUGACCCGGCAAUUUGCCGGGUC -...(((((...(((....))).))))).........((((((((.....)))))))) ( -20.60) >pst_1 1 58 + 1 UUCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCUCUUUGCCGGGUC ....(((((...(((....))).))))).........((((((((.....)))))))) ( -20.80) >consensus _UCAGAUUAUCUCCUCAUCAGGCUAAUCACGGUUUUUGACCCGGCAAUUUGCCGGGUC ....(((((...(((....))).))))).........((((((((.....)))))))) (-19.03 = -19.53 + 0.50)
| Location | 5,284,256 – 5,284,313 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 89.43 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -22.25 |
| Energy contribution | -22.75 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.53 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.29 |
| SVM RNA-class probability | 0.999861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 5284256 57 - 1 GACCCGGCAAAGUGCCGGGUC-GAAACCGUGAUUAGCCUGAUGAGGAGAUAAUCUGAA ((((((((.....))))))))-........(((((.(((....)))...))))).... ( -24.40) >pel_1 1 57 - 1 GACCCGGCAAGUUGCCGGGUCAAUAACCGUGAUUAGCCUGAUGAGGAGAUAAUCUGA- ((((((((.....)))))))).........(((((.(((....)))...)))))...- ( -24.40) >pf5_1 1 54 - 1 GACCCGGCAAAAAGCCGGGUCAAAAACCGUGAUUAGCCUGAUGAGGAGAUAAUC---- ((((((((.....)))))))).........(((((.(((....)))...)))))---- ( -22.90) >pfo_1 1 51 - 1 GACCCGGCAAAAAGCCGGGUCAAAAACCGUGAUUAGCCUGAUGAGGAGAUA------- ((((((((.....))))))))...............(((....))).....------- ( -19.70) >ppk_1 1 57 - 1 GACCCGGCAAAUUGCCGGGUCAAUAACCGUGAUUAGCCUGAUGAGGAGAUAAUCUGA- ((((((((.....)))))))).........(((((.(((....)))...)))))...- ( -24.40) >pst_1 1 58 - 1 GACCCGGCAAAGAGCCGGGUCAAAAACCGUGAUUAGCCUGAUGAGGAGAUAAUCUGAA ((((((((.....)))))))).........(((((.(((....)))...))))).... ( -24.10) >consensus GACCCGGCAAAAAGCCGGGUCAAAAACCGUGAUUAGCCUGAUGAGGAGAUAAUCUGA_ ((((((((.....)))))))).........(((((.(((....)))...))))).... (-22.25 = -22.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:53:18 2007