Locus 90

Sequence ID pao_1
Location 5,283,959 – 5,284,013
Length 54
Max. P 0.662329
window350

overview

Window 0

Location 5,283,959 – 5,284,013
Length 54
Sequences 4
Columns 54
Reading direction forward
Mean pairwise identity 89.81
Mean single sequence MFE -18.35
Consensus MFE -12.10
Energy contribution -13.10
Covariance contribution 1.00
Combinations/Pair 1.05
Mean z-score -4.26
Structure conservation index 0.66
SVM decision value 0.27
SVM RNA-class probability 0.662329
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 5283959 54 + 1
UUUGACAUGGAAAUGAGAAUCAUUAUUAUGUCACUCAACUGGUCGCGAGAUCAG
..((((((((.((((.....)))).)))))))).....((((((....)))))) ( -19.60)
>pau_1 1 54 + 1
UUUGACAUGGAAAUGAGAAUCAUUAUUAUAUCACUCAACUGGUCGCGAGAUCAG
..(((.((((.((((.....)))).)))).))).....((((((....)))))) ( -13.60)
>pf5_1 1 54 + 1
UUUGACUUGCAAAUGAUAAUGAUUAUUAUUGCAAGCAACUGGUCGCGAGAUCAG
.(((.(((((((.(((((.....)))))))))))))))((((((....)))))) ( -20.10)
>pfo_1 1 54 + 1
UUUGACUUGCAAAUGAUAAUGAUUAUUAUUGCAAGCAACUGGUCGCGAGAUCAG
.(((.(((((((.(((((.....)))))))))))))))((((((....)))))) ( -20.10)
>consensus
UUUGACAUGCAAAUGAGAAUCAUUAUUAUUGCAAGCAACUGGUCGCGAGAUCAG
.(((.(((((((((((......)))))..)))))))))((((((....)))))) (-12.10 = -13.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:53:13 2007