Locus 80

Sequence ID	pao_1
Location	5,265,304 – 5,265,664
Length	360
Max. P	0.999933

overview

Window 8

Location	5,265,304 – 5,265,424
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	98.50
Mean single sequence MFE	-38.80
Consensus MFE	-38.80
Energy contribution	-38.80
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-0.75
Structure conservation index	1.00
SVM decision value	0.57
SVM RNA-class probability	0.785287
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265304 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -39.70)
>pf5_1 958 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -37.90)
>pfo_1 961 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -37.90)
>pfs_1 961 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -37.90)
>pss_1 958 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -39.70)
>pst_1 958 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -39.70)
>consensus
CGGAAGGUUAAUUGAUGGGGUUAGCGAAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. (-38.80 = -38.80 +   0.00)

alignment

secondary structure

dotplot

Window 9

Location	5,265,344 – 5,265,464
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	98.50
Mean single sequence MFE	-47.60
Consensus MFE	-47.60
Energy contribution	-47.60
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.31
Structure conservation index	1.00
SVM decision value	4.64
SVM RNA-class probability	0.999933
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265344 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -48.50)
>pf5_1 998 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -46.70)
>pfo_1 1001 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -46.70)
>pfs_1 1001 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -46.70)
>pss_1 998 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -48.50)
>pst_1 998 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -48.50)
>consensus
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGAAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. (-47.60 = -47.60 +   0.00)

alignment

secondary structure

dotplot

Window 0

Location	5,265,384 – 5,265,504
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	98.50
Mean single sequence MFE	-38.70
Consensus MFE	-38.10
Energy contribution	-38.10
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-0.83
Structure conservation index	0.98
SVM decision value	0.60
SVM RNA-class probability	0.795175
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265384 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUU
((((((((...(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..)))).))))..)).... ( -40.10)
>pf5_1 1038 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUU
...((((((..(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..))...)))..))).... ( -37.30)
>pfo_1 1041 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUU
...((((((..(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..))...)))..))).... ( -37.30)
>pfs_1 1041 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUU
...((((((..(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..))...)))..))).... ( -37.30)
>pss_1 1038 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUU
((((((((...(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..)))).))))..)).... ( -40.10)
>pst_1 1038 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUU
((((((((...(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..)))).))))..)).... ( -40.10)
>consensus
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGAAAGCGAAGCUCUU
(((((.(((..(((((.....)))))..((((((((....(((....)))......))))))))..)))..))..)))(((....)))........((((((.((....))..)))))). (-38.10 = -38.10 +   0.00)

alignment

secondary structure

dotplot

Window 1

Location	5,265,464 – 5,265,584
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	95.06
Mean single sequence MFE	-40.85
Consensus MFE	-40.83
Energy contribution	-39.55
Covariance contribution	-1.28
Combinations/Pair	1.18
Mean z-score	-0.99
Structure conservation index	1.00
SVM decision value	1.33
SVM RNA-class probability	0.942909
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265464 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGAAGGAUUUACUCCGUAAGCUCUGGCUGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))((((((((((((...(((.....)))....)))))))))))).........((((..((((....(((((.....)))))))))..)))).... ( -43.10)
>pf5_1 1118 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -37.70)
>pfs_1 1121 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -37.70)
>ppk_1 1121 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGCGAGGGUGAAGGACUUGCUCCGUAAGCCCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -43.30)
>pss_1 1118 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGGAGGUGAAGCAUUUACUGCGUAAGCCCCUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((..(.(((...(((.....)))....))).)..))))).........((((..((((....(((((.....)))))))))..)))).... ( -40.30)
>pst_1 1118 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGCAUUUACUGCGUAAGCCCACGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -43.00)
>consensus
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUACUCCGUAAGCCCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... (-40.83 = -39.55 +  -1.28)

alignment

secondary structure

dotplot

Window 2

Location	5,265,504 – 5,265,624
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	95.06
Mean single sequence MFE	-43.45
Consensus MFE	-43.42
Energy contribution	-42.15
Covariance contribution	-1.27
Combinations/Pair	1.20
Mean z-score	-1.84
Structure conservation index	1.00
SVM decision value	3.87
SVM RNA-class probability	0.999673
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265504 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGAAGGAUUUACUCCGUAAGCUCUGGCUGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))((((((((((((...(((.....)))....))))))))))))........)).. ( -45.70)
>pf5_1 1158 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -40.30)
>pfs_1 1161 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -40.30)
>ppk_1 1161 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCGAGGGUGAAGGACUUGCUCCGUAAGCCCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -45.90)
>pss_1 1158 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGGAGGUGAAGCAUUUACUGCGUAAGCCCCUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((..(.(((...(((.....)))....))).)..)))))........)).. ( -42.90)
>pst_1 1158 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGCAUUUACUGCGUAAGCCCACGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -45.60)
>consensus
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUACUCCGUAAGCCCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. (-43.42 = -42.15 +  -1.27)

alignment

secondary structure

dotplot

Window 3

Location	5,265,544 – 5,265,664
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	98.00
Mean single sequence MFE	-35.02
Consensus MFE	-34.55
Energy contribution	-34.05
Covariance contribution	-0.50
Combinations/Pair	1.10
Mean z-score	-2.35
Structure conservation index	0.99
SVM decision value	4.56
SVM RNA-class probability	0.999920
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265544 120 + 1
UCACCCUAGCCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCGACCACCUGUGUCGGUUUGGGGUAC
..((((((((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..))).........((((((....).)))))..)))))).. ( -38.60)
>pel_1 1201 120 + 1
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCUAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -34.70)
>pfs_1 1201 120 + 1
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -34.30)
>ppk_1 1201 120 + 1
UCACCCUCGCCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCUAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -35.00)
>psp_1 1198 120 + 1
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -34.30)
>pss_1 1198 120 + 1
UCACCUCCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -33.20)
>consensus
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. (-34.55 = -34.05 +  -0.50)

alignment

secondary structure

dotplot

Window 4

Location	5,265,544 – 5,265,664
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	98.00
Mean single sequence MFE	-40.53
Consensus MFE	-38.68
Energy contribution	-39.18
Covariance contribution	0.50
Combinations/Pair	1.00
Mean z-score	-1.86
Structure conservation index	0.95
SVM decision value	2.94
SVM RNA-class probability	0.997849
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 5265544 120 - 1
GUACCCCAAACCGACACAGGUGGUCGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGA
.(((((...(((......)))((((((((..((....((....((((((((....))))))))..))..))..))......(((((....(....).....))))).)))))).))))). ( -41.70)
>pel_1 1201 120 - 1
GUACCCCAAACCGACACAGGUGGUUAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...((((.(.((..((.(((((((.....))))....((((((((....)))))))).......))).))...))(((((....(....).....)))))).))))..))))). ( -41.10)
>pfs_1 1201 120 - 1
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...(((........(((((.((((.....))))....((((((((....))))))))....)))))(((......(((((....(....).....)))))))))))..))))). ( -40.90)
>ppk_1 1201 120 - 1
GUACCCCAAACCGACACAGGUGGUUAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCGAGGGUGA
.((((((..(((......))).(((.((((.....))))..((((((((((....)))))))...................(((((....(....).....)))))))))))).))))). ( -39.00)
>psp_1 1198 120 - 1
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...(((........(((((.((((.....))))....((((((((....))))))))....)))))(((......(((((....(....).....)))))))))))..))))). ( -40.90)
>pss_1 1198 120 - 1
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGGAGGUGA
.(((((((..((..((((((((.((.((((.....)))).)).)))))(((....)))..)))..)).....(((......(((((....(....).....))))))))..))).)))). ( -39.60)
>consensus
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...((((.(...((((....((((.....))))....((((((((....))))))))...................))))(((.((((....)))).)))).))))..))))). (-38.68 = -39.18 +   0.50)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:51:45 2007