Locus 8

Sequence ID pao_1
Location 722,910 – 723,030
Length 120
Max. P 0.764836
window16

overview

Window 6

Location 722,910 – 723,030
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.50
Mean single sequence MFE -45.25
Consensus MFE -44.00
Energy contribution -45.25
Covariance contribution 1.25
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.97
SVM decision value 0.51
SVM RNA-class probability 0.764836
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 722910 120 + 1
GUCGACUAGCCGUUGGGAUCCUUGAGAUCUUAGUGGCGCAGCUAACGCGAUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGC
(((((((.((((((((((((.....))))))))))))...((....))....))))))).((.((..((((..((((....))))...))))........((.(((....))))))).)) ( -45.10)
>pf5_1 721 120 + 1
GUCAACUAGCCGUUGGGAGCCUUGAGCUCUUAGUGGCGCAGCUAACGCAUUAAGUUGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGC
(((((((.((((((((((((.....))))))))))))...((....))....))))))).((.((..((((..((((....))))...))))........((.(((....))))))).)) ( -45.30)
>psp_1 721 120 + 1
GUCAACUAGCCGUUGGGAGCCUUGAGCUCUUAGUGGCGCAGCUAACGCAUUAAGUUGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGC
(((((((.((((((((((((.....))))))))))))...((....))....))))))).((.((..((((..((((....))))...))))........((.(((....))))))).)) ( -45.30)
>pss_1 721 120 + 1
GUCAACUAGCCGUUGGGAGCCUUGAGCUCUUAGUGGCGCAGCUAACGCAUUAAGUUGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGC
(((((((.((((((((((((.....))))))))))))...((....))....))))))).((.((..((((..((((....))))...))))........((.(((....))))))).)) ( -45.30)
>consensus
GUCAACUAGCCGUUGGGAGCCUUGAGCUCUUAGUGGCGCAGCUAACGCAUUAAGUUGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGC
(((((((.((((((((((((.....))))))))))))...((....))....))))))).((.((..((((..((((....))))...))))........((.(((....))))))).)) (-44.00 = -45.25 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:45:47 2007