Locus 78

Sequence ID pao_1
Location 5,264,104 – 5,264,224
Length 120
Max. P 0.955677
window263

overview

Window 3

Location 5,264,104 – 5,264,224
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -37.95
Consensus MFE -36.15
Energy contribution -35.93
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.27
Structure conservation index 0.95
SVM decision value 1.46
SVM RNA-class probability 0.955677
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 5264104 120 + 1
CUUGACGAUGACCUACUCUCACAUGGGGAGACCCCACACUACCAUCGGCGAUGCGUCGUUUCACUUCUGAGUUCGGGAAGGGAUCAGGUGGUUCCAACGCUCUAUGAUCGUCAAGCAAUU
(((((((((.((((...((((...(((....)))...........(((((...))))).........))))...)))..((((((....)))))).........).)))))))))..... ( -37.30)
>pst_1 1 120 + 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUACAUCGUUUCACUGCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAAUGCUCUAUGGUCGUCAAGAAAUU
(((((((((.((((...((((((.(((....)))............(((((....)))))....)).))))...))).(((((((....)))))))........).)))))))))..... ( -38.30)
>pau_1 1 120 + 1
CUUGACGAUGACCUACUCUCACAUGGGGAGACCCCACACUACCAUCGGCGAUGCGUCGUUUCACUUCUGAGUUCGGGAAGGGAUCAGGUGGUUCCAACGCUCUAUGAUCGUCAAGCAAUU
(((((((((.((((...((((...(((....)))...........(((((...))))).........))))...)))..((((((....)))))).........).)))))))))..... ( -37.30)
>pf5_1 1 120 + 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUUCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAACGCUCUAUGGUCGUCAAGAAAUU
((((((((................(((....))).......((((.((((..............(((((....)))))(((((((....))))))).))).).))))))))))))..... ( -38.20)
>pfo_1 1 120 + 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUUCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAACGCUCUAUGGUCGUCAAGAAAUU
((((((((................(((....))).......((((.((((..............(((((....)))))(((((((....))))))).))).).))))))))))))..... ( -38.20)
>pss_1 1 120 + 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUACACCGUUUCACUGCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAAUGCUCUAUGGUCGUCAAGAAAUU
((((((((................(((....))).......((((.((((.....(((.((((....))))..)))..(((((((....))))))).))).).))))))))))))..... ( -38.40)
>consensus
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUUCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAACGCUCUAUGGUCGUCAAGAAAUU
(((((((((.((((...((((...(((....)))............((((......)))).......))))...)))..((((((....)))))).........).)))))))))..... (-36.15 = -35.93 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:51:16 2007