Locus 77

Sequence ID pao_1
Location 5,242,013 – 5,242,104
Length 91
Max. P 0.827174
window262

overview

Window 2

Location 5,242,013 – 5,242,104
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 89.52
Mean single sequence MFE -28.12
Consensus MFE -27.82
Energy contribution -27.48
Covariance contribution -0.33
Combinations/Pair 1.09
Mean z-score -1.08
Structure conservation index 0.99
SVM decision value 0.70
SVM RNA-class probability 0.827174
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 5242013 91 + 1
AAUGCGCGCCACUCGGCUACAUAGCUCAGUCGGUUAGAGCGCAGCAUUCAUAAUGCUGAUGUCCCAGGUUCAAGUCCCGGUGUAGCCACCA
..............(((((((..((((.........)))).((((((.....)))))).....((.((.......)).))))))))).... ( -26.10)
>pau_1 1 91 + 1
AAUGCGCGCCACUCGGCUACAUAGCUCAGUCGGUUAGAGCGCAGCAUUCAUAAUGCUGAUGUCCCAGGUUCAAGUCCCGGUGUAGCCACCA
..............(((((((..((((.........)))).((((((.....)))))).....((.((.......)).))))))))).... ( -26.10)
>pel_1 1 77 + 1
--------------GGCUACAUAGCUCAGUUGGUUAGAGCAUAGCAUUCAUAAUGCUGGGGUCCGGGGUUCAAGUCCCUGUGUAGCCACCA
--------------(((((((((((((.........)))).((((((.....))))))......((((......))))))))))))).... ( -28.40)
>ppk_1 1 90 + 1
AAUGCGCGCCA-UCGGCUACAUAGCUCAGUUGGUUAGAGCAUAGCAUUCAUAAUGCUGGGGUCCGGGGUUCAAGUCCCUGUGUAGCCACCA
...........-..(((((((((((((.........)))).((((((.....))))))......((((......))))))))))))).... ( -28.70)
>psp_1 1 91 + 1
AAUGCGCGCCACUUGGCUACAUAGCUCAGUUGGUUAGAGCAUAGCAUUCAUAAUGCUGGGGUCCGGGGUUCAAGUCCCUGUGUAGCCACCA
.((((..((((((.((((....)))).)).))))....))))(((((.....)))))(((((((((((.......))))).)..))).)). ( -29.70)
>pss_1 1 91 + 1
AAUGCGCGCCACUUGGCUACAUAGCUCAGUUGGUUAGAGCAUAGCAUUCAUAAUGCUGGGGUCCGGGGUUCAAGUCCCUGUGUAGCCACCA
.((((..((((((.((((....)))).)).))))....))))(((((.....)))))(((((((((((.......))))).)..))).)). ( -29.70)
>consensus
AAUGCGCGCCACUCGGCUACAUAGCUCAGUUGGUUAGAGCAUAGCAUUCAUAAUGCUGGGGUCCGGGGUUCAAGUCCCUGUGUAGCCACCA
..............(((((((..((((.........)))).((((((.....)))))).....(((((.......)))))))))))).... (-27.82 = -27.48 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:51:15 2007