Locus 72

Sequence ID	pao_1
Location	4,939,194 – 4,939,277
Length	83
Max. P	0.943307

overview

Window 6

Location	4,939,194 – 4,939,277
Length	83
Sequences	6
Columns	83
Reading direction	reverse
Mean pairwise identity	83.78
Mean single sequence MFE	-35.15
Consensus MFE	-23.58
Energy contribution	-24.73
Covariance contribution	1.15
Combinations/Pair	1.04
Mean z-score	-4.31
Structure conservation index	0.67
SVM decision value	1.33
SVM RNA-class probability	0.943307
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 4939194 83 - 1
GUGAUUGGUGUUCAGCAAAGGCCGGUUCUGCUAUCAUCGCCGGCCAUUGUUGAAAACAGUUCGCAGUCAGCGCUUAAGCGGCC
((((...((.((((((((.(((((((..((....))..))))))).)))))))).))...)))).(((.((......))))). ( -34.50)
>pau_1 1 83 - 1
GUGAUUGGUGUUCAGCAAAGGCCGGUUCUGCUAUCAUCGCCGGCCAUUGUUGAAAACAGUUCGCAGUCAGCGCUUAAGCGGCC
((((...((.((((((((.(((((((..((....))..))))))).)))))))).))...)))).(((.((......))))). ( -34.50)
>pel_1 1 83 - 1
GUGAUUGGUGUUCAGCAAAGGCCGGGUCUGUUAUCAUCCCCAGCCUUUGUUGAUACCUGUUCGCAAUUUGCGCUGAAGCGGCC
((((..(((((.((((((((((.(((..((....))..))).)))))))))))))))...))))......(((....)))... ( -37.80)
>pf5_1 1 83 - 1
GUGAUUGGUGUUCAGCAAAGGCAUGGUCUGCUAUUAUCGCCAGCCUUUGUUGAUACCAGUUCGCAAUUUGCGCUGAAGCGGCC
(((((((((((.((((((((((.((((...........))))))))))))))))))))).))))......(((....)))... ( -35.80)
>pfo_1 1 83 - 1
GUGAUUGGUGUUCAGCAAAGGCUCGGUCUGCUAUCAUCGCCAGCCUUUGUUGAUACCAGUUCGCAAUUUGCGCUGAAGCGGCC
(((((((((((.(((((((((((.(((.((....))..))))))))))))))))))))).))))......(((....)))... ( -35.90)
>pfs_1 1 65 - 1
GUGAUUGGUGUUCAGCAAAGGUCUGGUCUGCUAUUAUCGCCAGCCUUUGUUGAUACCAGUUCGCA------------------
(((((((((((.(((((((((.(((((...........))))))))))))))))))))).)))).------------------ ( -32.40)
>consensus
GUGAUUGGUGUUCAGCAAAGGCCGGGUCUGCUAUCAUCGCCAGCCUUUGUUGAUACCAGUUCGCAAUUUGCGCUGAAGCGGCC
(((((((((((.((((((((((....................))))))))))))))))).))))......(((....)))... (-23.58 = -24.73 +   1.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:50:54 2007