Locus 71

Sequence ID pao_1
Location 4,793,664 – 4,793,780
Length 116
Max. P 0.996634
window245

overview

Window 5

Location 4,793,664 – 4,793,780
Length 116
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 96.77
Mean single sequence MFE -38.62
Consensus MFE -37.00
Energy contribution -37.40
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.96
SVM decision value 2.73
SVM RNA-class probability 0.996634
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 4793664 116 - 1
CGAUUGCUGAGCCAAGUUUAGGGUUUUCUCAAAACCCAA--GCAGUAUUGAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGG
((((..((((((((.((((.((((((.....))))))))--)).(.((..((((....))))..))).))))))))))))..(((((((.((((........).)))..))).)))). ( -40.30)
>pf5_1 1 116 - 1
CGAUUGCUGAGCCAAGUUUAGGGUUUUCUCAAAACCCAA--AGAUGUUUGAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGG
((((..(((((((.......((((((.....))))))..--..(((.(..((((....))))..).))))))))))))))..(((((((.((((........).)))..))).)))). ( -38.20)
>psp_1 1 118 - 1
CGAUUGCUGAGCCAAGUUUAGGGUUUUCUCAAAACCCAGUUAGAUGUUUGAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGG
((((..(((((((.......((((((.....))))))......(((.(..((((....))))..).))))))))))))))..(((((((.((((........).)))..))).)))). ( -38.20)
>pss_1 1 118 - 1
CGAUUGCUGAGCCAAGUUUAGGGUUUUCUCAAAACCCAGUUAGAUGUUUGAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGG
((((..(((((((.......((((((.....))))))......(((.(..((((....))))..).))))))))))))))..(((((((.((((........).)))..))).)))). ( -38.20)
>pst_1 1 118 - 1
CGAUUGCUGAGCCAAGUUUAGGGUUUUCUCAAAACCCAGUUAGAUGUUUGAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGG
((((..(((((((.......((((((.....))))))......(((.(..((((....))))..).))))))))))))))..(((((((.((((........).)))..))).)))). ( -38.20)
>consensus
CGAUUGCUGAGCCAAGUUUAGGGUUUUCUCAAAACCCAGUUAGAUGUUUGAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGG
((((..(((((((.......((((((.....))))))......(((.(..((((....))))..).))))))))))))))..(((((((.((((........).)))..))).)))). (-37.00 = -37.40 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:50:52 2007