Locus 50

Sequence ID	pao_1
Location	4,536,674 – 4,536,748
Length	74
Max. P	0.893087

overview

Window 7

Location	4,536,674 – 4,536,748
Length	74
Sequences	5
Columns	74
Reading direction	forward
Mean pairwise identity	94.04
Mean single sequence MFE	-20.96
Consensus MFE	-19.16
Energy contribution	-19.56
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.37
Structure conservation index	0.91
SVM decision value	0.97
SVM RNA-class probability	0.893087
Prediction	RNA

Download alignment: ClustalW | MAF

>pao_1 4536674 74 + 1
CAAUCCCGUUCUCUCUUUAUCCGGACUAUGACCGUCGGCCCCGGAAUCGCACCGGGUCUGCUGACCUUGUCGUC
.....(((.............)))...(((((.(((((((((((.......)))))...))))))...))))). ( -21.62)
>pau_1 1 74 + 1
CAAUCCCGUUCUCUCUUUAUCCGGACUAUGACCGUCGGCCCCGGAAUCGCACCGGGUCUGCUGACCUUGUCGUC
.....(((.............)))...(((((.(((((((((((.......)))))...))))))...))))). ( -21.62)
>pf5_1 1 74 + 1
CAAUCCCGUUCUCUCUUCAUCCGGACUAUGACCGUCGGCCCCGGAAUCACACCGGGUCUGCUGACCUUGUCGUC
.....(((.............)))...(((((.(((((((((((.......)))))...))))))...))))). ( -21.62)
>pfs_1 1 72 + 1
CAAUCCCGUUCUCUCUUCAUCCGGACUAUGACCGUCGGCCCCGGGAUCACACCGGGUCUGCUGACCUUGUCG--
.....(((.............))).....(((.(((((((((((.......)))))...))))))...))).-- ( -22.02)
>pss_1 1 69 + 1
CAAUCCCGCUCUCUCUUCAUCCGGACUAUGACCGUCGGCCCCGGAAUCACACCGGGUCUGCUGACCUUG-----
.....(((.............))).........(((((((((((.......)))))...))))))....----- ( -17.92)
>consensus
CAAUCCCGUUCUCUCUUCAUCCGGACUAUGACCGUCGGCCCCGGAAUCACACCGGGUCUGCUGACCUUGUCGUC
.....(((.............))).....(((.(((((((((((.......)))))...))))))...)))... (-19.16 = -19.56 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:48:27 2007