| Sequence ID | pao_1 |
|---|---|
| Location | 3,524,011 – 3,524,090 |
| Length | 79 |
| Max. P | 0.999990 |
| Location | 3,524,011 – 3,524,090 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 93.14 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -30.74 |
| Energy contribution | -29.77 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.53 |
| Structure conservation index | 1.03 |
| SVM decision value | 5.58 |
| SVM RNA-class probability | 0.999990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3524011 79 + 1 GUUCCGCGAUAGCUCAGUCGGUAGAGCAAAUGACUGUUAAUCAUUGGGUCCCUGGUUCGAGUCCAGGUCGCGGAGCCAA (((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......))))))))))))))... ( -31.70) >pst_1 1 78 + 1 GUUCCGCGAUAGCUCAGUUGGUAGAGCAAGUGACUGUUAAUCACUGGGUCCCUGGUUCGAGUCCAGGUCGUGGAGCCA- (((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......))))))))))))))..- ( -32.10) >pf5_1 1 79 + 1 GUUCCGUGAUAGCUCAGUCGGUAGAGCAAAUGACUGUUAAUCAUUGGGUCCCAGGUUCGAGUCCUGGUCACGGAGCCAA (((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......))))))))))))))... ( -30.20) >pfo_1 1 78 + 1 -UUCCGCAAUAGCUCAGUUGGUAGAGCAAGUGACUGUUAAUCACUGGGUCCCUGGUUCGAGUCCAGGUUGUGGAGCCAA -((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......))))))))))))).... ( -27.00) >pfs_1 1 77 + 1 -UUCCGCGAUAGCUCAGUUGGUAGAGCAAAUGACUGUUAAUCAUUGGGUCCCUGGUUCGAGUCCAGGUCGUGGAGCCA- -((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......)))))))))))))...- ( -26.50) >pss_1 1 78 + 1 GUUCCGCGAUAGCUCAGUUGGUAGAGCAAGUGACUGUUAAUCACUGGGUCCCUGGUUCGAGUCCAGGUCGUGGAGCCA- (((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......))))))))))))))..- ( -32.10) >consensus GUUCCGCGAUAGCUCAGUUGGUAGAGCAAAUGACUGUUAAUCACUGGGUCCCUGGUUCGAGUCCAGGUCGUGGAGCCA_ (((((((((..(((((((.(((..((((......)))).)))))))))).(((((.......))))))))))))))... (-30.74 = -29.77 + -0.97)
| Location | 3,524,011 – 3,524,090 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 93.14 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -24.45 |
| Energy contribution | -23.12 |
| Covariance contribution | -1.33 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.97 |
| SVM decision value | 4.39 |
| SVM RNA-class probability | 0.999888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3524011 79 - 1 UUGGCUCCGCGACCUGGACUCGAACCAGGGACCCAAUGAUUAACAGUCAUUUGCUCUACCGACUGAGCUAUCGCGGAAC .....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))).. ( -28.10) >pst_1 1 78 - 1 -UGGCUCCACGACCUGGACUCGAACCAGGGACCCAGUGAUUAACAGUCACUUGCUCUACCAACUGAGCUAUCGCGGAAC -....(((.((((((((.......))))).....((((((.....)))))).((((........))))..))).))).. ( -25.00) >pf5_1 1 79 - 1 UUGGCUCCGUGACCAGGACUCGAACCUGGGACCCAAUGAUUAACAGUCAUUUGCUCUACCGACUGAGCUAUCACGGAAC .....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))).. ( -26.60) >pfo_1 1 78 - 1 UUGGCUCCACAACCUGGACUCGAACCAGGGACCCAGUGAUUAACAGUCACUUGCUCUACCAACUGAGCUAUUGCGGAA- .....(((.((((((((.......))))).....((((((.....)))))).((((........))))..))).))).- ( -23.20) >pfs_1 1 77 - 1 -UGGCUCCACGACCUGGACUCGAACCAGGGACCCAAUGAUUAACAGUCAUUUGCUCUACCAACUGAGCUAUCGCGGAA- -....(((.((((((((.......))))).....((((((.....)))))).((((........))))..))).))).- ( -22.70) >pss_1 1 78 - 1 -UGGCUCCACGACCUGGACUCGAACCAGGGACCCAGUGAUUAACAGUCACUUGCUCUACCAACUGAGCUAUCGCGGAAC -....(((.((((((((.......))))).....((((((.....)))))).((((........))))..))).))).. ( -25.00) >consensus _UGGCUCCACGACCUGGACUCGAACCAGGGACCCAAUGAUUAACAGUCACUUGCUCUACCAACUGAGCUAUCGCGGAAC .....(((.((((((((.......))))).....((((((.....)))))).((((........))))..))).))).. (-24.45 = -23.12 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:48:23 2007