| Sequence ID | pao_1 |
|---|---|
| Location | 3,515,135 – 3,515,215 |
| Length | 80 |
| Max. P | 0.999858 |
| Location | 3,515,135 – 3,515,215 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -29.70 |
| Energy contribution | -28.32 |
| Covariance contribution | -1.39 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.12 |
| Structure conservation index | 1.00 |
| SVM decision value | 4.28 |
| SVM RNA-class probability | 0.999858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3515135 80 + 1 AAUUUGGUGGAGCUAGACGGGAUCGAACCGUCGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC ....(((..((((..(((((.......))))).....(((((((...))))))).))))..)))((((.....))))... ( -28.70) >pst_1 1 80 + 1 AAAUUGGUGGAGCUUAGCGGGAUCGAACCGCUGACCUCCUGCAUGCCAUGCAGGCGCUCUCCCAGCUGAGCUAAAGCCCC ....(((..(((((((((((.......)))))))...(((((((...))))))).))))..)))(((.......)))... ( -32.80) >pf5_1 1 80 + 1 AAUUUGGUGGAGCUAGACGGGAUCGAACCGUCGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC ....(((..((((..(((((.......))))).....(((((((...))))))).))))..)))((((.....))))... ( -28.70) >pfo_1 1 77 + 1 ---UUGGUGGAGCUAGACGGGAUCGAACCGUCGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC ---.(((..((((..(((((.......))))).....(((((((...))))))).))))..)))((((.....))))... ( -28.70) >pfs_1 1 77 + 1 ---UUGGUGGAGCUAAACGGGAUCGAACCGUUGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC ---.(((..((((..(((((.......))))).....(((((((...))))))).))))..)))((((.....))))... ( -25.80) >pss_1 1 80 + 1 AAUUUGGUGGAGCUUAGCGGGAUCGAACCGCUGACCUCCUGCAUGCCAUGCAGGCGCUCUCCCAGCUGAGCUAAAGCCCC ....(((..(((((((((((.......)))))))...(((((((...))))))).))))..)))(((.......)))... ( -32.80) >consensus AAUUUGGUGGAGCUAAACGGGAUCGAACCGUCGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC ....(((..((((..(((((.......))))).....(((((((...))))))).))))..)))(((.......)))... (-29.70 = -28.32 + -1.39)
| Location | 3,515,135 – 3,515,215 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -30.47 |
| Consensus MFE | -31.84 |
| Energy contribution | -30.45 |
| Covariance contribution | -1.39 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.64 |
| Structure conservation index | 1.04 |
| SVM decision value | 3.73 |
| SVM RNA-class probability | 0.999569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3515135 80 - 1 GGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCGACGGUUCGAUCCCGUCUAGCUCCACCAAAUU .((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))).... ( -30.20) >pst_1 1 80 - 1 GGGGCUUUAGCUCAGCUGGGAGAGCGCCUGCAUGGCAUGCAGGAGGUCAGCGGUUCGAUCCCGCUAAGCUCCACCAAUUU .((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))).... ( -32.50) >pf5_1 1 80 - 1 GGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCGACGGUUCGAUCCCGUCUAGCUCCACCAAAUU .((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))).... ( -30.20) >pfo_1 1 77 - 1 GGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCGACGGUUCGAUCCCGUCUAGCUCCACCAA--- .((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))).--- ( -30.20) >pfs_1 1 77 - 1 GGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCAACGGUUCGAUCCCGUUUAGCUCCACCAA--- (((((((.(((...)))((((((.(.(((((((...))))))).).))..((...)).))))...))))))).....--- ( -27.20) >pss_1 1 80 - 1 GGGGCUUUAGCUCAGCUGGGAGAGCGCCUGCAUGGCAUGCAGGAGGUCAGCGGUUCGAUCCCGCUAAGCUCCACCAAAUU .((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))).... ( -32.50) >consensus GGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCAACGGUUCGAUCCCGUCUAGCUCCACCAAAUU .((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))).... (-31.84 = -30.45 + -1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:48:21 2007