Locus 45

Sequence ID pao_1
Location 3,514,845 – 3,514,923
Length 78
Max. P 0.884533
window128

overview

Window 8

Location 3,514,845 – 3,514,923
Length 78
Sequences 6
Columns 78
Reading direction reverse
Mean pairwise identity 90.26
Mean single sequence MFE -31.20
Consensus MFE -32.66
Energy contribution -30.50
Covariance contribution -2.16
Combinations/Pair 1.24
Mean z-score -0.90
Structure conservation index 1.05
SVM decision value 0.93
SVM RNA-class probability 0.884533
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 3514845 78 - 1
CGGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCGACGGUUCGAUCCCGUCUAGCUCCACCAC
.(((((((..((((........)))).(((((((...))))))).....(((((.......))))))))))))..... ( -30.30)
>pf5_1 1 77 - 1
CGGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCAUGGCAUGCAAGAGGUCGACGGUUCGAUCCCGUCUAGCUCCACCA-
.(((((((..((((........)))).(((((((...))))))).....(((((.......))))))))))))....- ( -30.30)
>pfs_1 1 78 - 1
CGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAACGGUUCGAUCCCGUUUGGCUCCACCAC
.(((((((.(((...)))((((((.(.(((((.......))))).).))..((...)).))))...)))))))..... ( -29.90)
>ppk_1 1 78 - 1
CGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCAC
.(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))..... ( -32.10)
>psp_1 1 78 - 1
CGGGGCUUUAGCUCAGCUGGGAGAGCGCCUGCAUGGCAUGCAGGAGGUCAGCGGUUCGAUCCCGCUAAGCUCCACCAA
..((((....))))...(((..((((.(((((((...))))))).....(((((.......)))))..))))..))). ( -32.50)
>pss_1 1 78 - 1
CGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCAC
.(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))..... ( -32.10)
>consensus
CGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCAUGGCACGCAGGAGGUCAACGGUUCGAUCCCGCUUAGCUCCACCAC
.(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))..... (-32.66 = -30.50 +  -2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:48:16 2007