| Sequence ID | pao_1 |
|---|---|
| Location | 3,475,456 – 3,475,542 |
| Length | 86 |
| Max. P | 0.999988 |
| Location | 3,475,456 – 3,475,542 |
|---|---|
| Length | 86 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 96.10 |
| Mean single sequence MFE | -39.38 |
| Consensus MFE | -39.66 |
| Energy contribution | -39.38 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.57 |
| Structure conservation index | 1.01 |
| SVM decision value | 5.47 |
| SVM RNA-class probability | 0.999988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3475456 86 + 1 UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGUCGG ....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..... ( -39.70) >pst_1 1 83 + 1 UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGU--- ....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..--- ( -39.70) >pel_1 1 80 + 1 -AUGGCGCGGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCCGCGC----- -...(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))----- ( -39.50) >ppk_1 1 80 + 1 -AUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGC----- -...(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))----- ( -38.00) >psp_1 1 83 + 1 UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGU--- ....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..--- ( -39.70) >pss_1 1 83 + 1 UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGU--- ....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..--- ( -39.70) >consensus UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGU___ ....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..... (-39.66 = -39.38 + -0.28)
| Location | 3,475,456 – 3,475,542 |
|---|---|
| Length | 86 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 96.10 |
| Mean single sequence MFE | -40.85 |
| Consensus MFE | -41.13 |
| Energy contribution | -40.85 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.09 |
| Structure conservation index | 1.01 |
| SVM decision value | 4.60 |
| SVM RNA-class probability | 0.999926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3475456 86 - 1 CCGACGCGCAGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCUGCGCCAUA .....(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).))))))))).... ( -40.70) >pst_1 1 83 - 1 ---ACGCGCAGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCUGCGCCAUA ---..(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).))))))))).... ( -40.70) >pel_1 1 80 - 1 -----GCGCGGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCCGCGCCAU- -----(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).)))))))))...- ( -41.90) >ppk_1 1 80 - 1 -----GCGCAGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCUGCGCCAU- -----(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).)))))))))...- ( -40.40) >psp_1 1 83 - 1 ---ACGCGCAGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCUGCGCCAUA ---..(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).))))))))).... ( -40.70) >pss_1 1 83 - 1 ---ACGCGCAGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCUGCGCCAUA ---..(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).))))))))).... ( -40.70) >consensus ___ACGCGCAGCGGUAGUUCAGUCGGUUAGAAUACCGGCCUGUCACGCCGGGGGUCGCGGGUUCGAGUCCCGUCCGCUGCGCCAUA .....(((((((((..((.((((((((......))))).)))..))..(((((.(((......))).))))).))))))))).... (-41.13 = -40.85 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:48:08 2007