| Sequence ID | pao_1 |
|---|---|
| Location | 3,318,803 – 3,318,861 |
| Length | 58 |
| Max. P | 0.803033 |
| Location | 3,318,803 – 3,318,861 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 88.68 |
| Mean single sequence MFE | -11.26 |
| Consensus MFE | -11.13 |
| Energy contribution | -11.13 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3318803 58 + 1 GCGUACCUUUGUUCCACUCCUAAUGGUCUUGACCCGGAUUCAUCCCCCAGAACCCGGG ..............((..((....))...)).(((((.(((........))).))))) ( -11.80) >pel_1 1 53 + 1 -----CCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCCCCCCCCAGAACCCGGG -----.............((....))......(((((.(((........))).))))) ( -10.80) >pfo_1 1 58 + 1 GCGUGCCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCACCCCCCAGAACCCGGG ....(((.................))).....(((((.(((........))).))))) ( -11.43) >ppk_1 1 58 + 1 GCGUACCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCCUCCCCCAGAACCCGGG ..(.(((.................))))....(((((.(((........))).))))) ( -10.93) >pss_1 1 53 + 1 -----CCUUUGUUUUACUCCUAAUGGUCUUGACCCGGCUUCACCCCCCAGAAUCCGGG -----.............((....))......(((((.(((........))).))))) ( -11.30) >pst_1 1 54 + 1 ----ACCUUUGUUUUACUCCUAAUGGUCUUAACCCGGCUUCACCCCCCAGAAUCCGGG ----..............((....))......(((((.(((........))).))))) ( -11.30) >consensus ____ACCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCACCCCCCAGAACCCGGG ..................((....))......(((((.(((........))).))))) (-11.13 = -11.13 + 0.00)
| Location | 3,318,803 – 3,318,861 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 88.68 |
| Mean single sequence MFE | -15.72 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 3318803 58 - 1 CCCGGGUUCUGGGGGAUGAAUCCGGGUCAAGACCAUUAGGAGUGGAACAAAGGUACGC (((((((((........)))))))))......((((.....))))............. ( -18.90) >pel_1 1 53 - 1 CCCGGGUUCUGGGGGGGGAAUCCGGGUUAAGACCAUUAGGAGUAAAACAAAGG----- ((((((((((......))))))))))......((....)).............----- ( -16.90) >pfo_1 1 58 - 1 CCCGGGUUCUGGGGGGUGAAUCCGGGUUAAGACCAUUAGGAGUAAAACAAAGGCACGC (((((((((........)))))))))......((....)).................. ( -16.30) >ppk_1 1 58 - 1 CCCGGGUUCUGGGGGAGGAAUCCGGGUUAAGACCAUUAGGAGUAAAACAAAGGUACGC ((((((((((......)))))))))).....(((.((.(........).))))).... ( -17.60) >pss_1 1 53 - 1 CCCGGAUUCUGGGGGGUGAAGCCGGGUCAAGACCAUUAGGAGUAAAACAAAGG----- (((((.(((........))).)))))......((....)).............----- ( -12.30) >pst_1 1 54 - 1 CCCGGAUUCUGGGGGGUGAAGCCGGGUUAAGACCAUUAGGAGUAAAACAAAGGU---- (((((.(((........))).)))))......((....))..............---- ( -12.30) >consensus CCCGGGUUCUGGGGGGUGAAUCCGGGUUAAGACCAUUAGGAGUAAAACAAAGGU____ (((((((((........)))))))))......((....)).................. (-14.93 = -15.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:48:00 2007