Locus 4

Sequence ID pao_1
Location 707,568 – 707,640
Length 72
Max. P 0.810687
window6

overview

Window 6

Location 707,568 – 707,640
Length 72
Sequences 6
Columns 72
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -23.47
Consensus MFE -21.47
Energy contribution -20.83
Covariance contribution -0.64
Combinations/Pair 1.11
Mean z-score -1.35
Structure conservation index 0.91
SVM decision value 0.65
SVM RNA-class probability 0.810687
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 707568 72 + 1
AACCACAAUCGCCAUCGCGAAGAGGUGUUAACCGUCCUACGCAGGUGCGUCGUUCGCAUCUGACGGGCAUGC
........((((....))))...(((....)))((((....((((((((.....))))))))..)))).... ( -25.60)
>pau_1 1 72 + 1
AACCACAAUCGCCAUCGCGAAGAGGUGUUAACCGUCCUACGCAGGUGCGUCGUUCGCAUCUGACGGGCAUGC
........((((....))))...(((....)))((((....((((((((.....))))))))..)))).... ( -25.60)
>pfo_1 1 72 + 1
AACCAAAAUCGCCAUCGCGAAGAGGUGUUAACCGUCCUACGCAGGUGCGUUGUUCGCACUUGACGGGCAUGC
........((((....))))...(((....)))((((....((((((((.....))))))))..)))).... ( -25.50)
>psp_1 1 72 + 1
AACCAAAAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGACUCAACUGACGGGCAUGC
........((((....))))...(((....)))((((....(((.((((.....)))).)))..)))).... ( -19.90)
>pss_1 1 72 + 1
AACCAAAAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGGCUCACCUGACGGGCAUGC
........((((....))))...(((....)))((((....(((.(((((...))))).)))..)))).... ( -22.10)
>pst_1 1 72 + 1
AACCAAAAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGGCUCAGCUGACGGGCAUGC
........((((....))))...(((....)))((((....(((.(((((...))))).)))..)))).... ( -22.10)
>consensus
AACCAAAAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGUCGCACCUGACGGGCAUGC
........((((....))))...(((....)))((((....(((.((((.....)))).)))..)))).... (-21.47 = -20.83 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:45:33 2007