Locus 39

Sequence ID pao_1
Location 3,312,563 – 3,312,622
Length 59
Max. P 0.898570
window114

overview

Window 4

Location 3,312,563 – 3,312,622
Length 59
Sequences 6
Columns 59
Reading direction forward
Mean pairwise identity 82.81
Mean single sequence MFE -17.33
Consensus MFE -11.26
Energy contribution -11.12
Covariance contribution -0.14
Combinations/Pair 1.09
Mean z-score -3.44
Structure conservation index 0.65
SVM decision value 1.00
SVM RNA-class probability 0.898570
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 3312563 59 + 1
GCGACCGCAAAACCGCCCGUAUCUUGACCGGAUCACCCUUUUCGGUCAAUACGGCAAAA
((....))......(((.((((..((((((((........))))))))))))))).... ( -20.30)
>pf5_1 1 59 + 1
GCGAGCGCAAAACCGACCGUAUCUUGACCGGAACGCCUUUUCCGGUCAAUACGGCAAAA
((....))......(.((((((..(((((((((......)))))))))))))))).... ( -23.40)
>pfo_1 1 59 + 1
GCGAGCGCAAAACCGCCCGUAUCUUGACCGGAACGCCCAUUCUGGUCAAUACGCCAAAA
(((.(((......))).)((((..(((((((((......)))))))))))))))..... ( -18.70)
>ppk_1 1 50 + 1
--------AAAACCGCUCGUAUCUUGACCGUAACACCCAUUCCGGUCAAUACGGCAAA-
--------......((.(((((..((((((.((......)).)))))))))))))...- ( -15.00)
>psp_1 1 53 + 1
-----CGCAAAACCGCCCGUAUAUUGACCGCAACGCCUUUUCCGGUCAAUACGCCAAA-
-----.((......))..(..(((((((((.((......)).)))))))))..)....- ( -13.30)
>pss_1 1 53 + 1
-----CGCAAAACCGCCCGUAUAUUGACCGCAACGCCUUUUCCGGUCAAUACGCCAAA-
-----.((......))..(..(((((((((.((......)).)))))))))..)....- ( -13.30)
>consensus
_____CGCAAAACCGCCCGUAUCUUGACCGGAACGCCCUUUCCGGUCAAUACGCCAAA_
.................(((((..((((((............)))))))))))...... (-11.26 = -11.12 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:47:58 2007