Locus 35

Sequence ID pao_1
Location 3,106,753 – 3,106,814
Length 61
Max. P 0.963707
window103

overview

Window 3

Location 3,106,753 – 3,106,814
Length 61
Sequences 6
Columns 61
Reading direction forward
Mean pairwise identity 98.25
Mean single sequence MFE -25.07
Consensus MFE -22.17
Energy contribution -22.50
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.88
SVM decision value 1.56
SVM RNA-class probability 0.963707
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 3106753 61 + 1
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGCCACGUGGGUUGGGAUGUGCCAGUA
(((((.((((..((((((((.....(((.....))))))).))))..)))).))))).... ( -26.80)
>pau_1 1 61 + 1
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGCCACGUGGGUUGGGAUGUGCCAGUA
(((((.((((..((((((((.....(((.....))))))).))))..)))).))))).... ( -26.80)
>pfs_1 1 61 + 1
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGUCACGUGGGUUGGGAUGAGCCAGUA
(((.(.((((..((((...((((((.........)))))).))))..)))).).))).... ( -24.20)
>ppk_1 1 61 + 1
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGUCACGUGGGUUGGGAUGAGCCAGUA
(((.(.((((..((((...((((((.........)))))).))))..)))).).))).... ( -24.20)
>psp_1 1 61 + 1
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGUCACGUGGGUUGGGAUGAGCCAGUA
(((.(.((((..((((...((((((.........)))))).))))..)))).).))).... ( -24.20)
>pss_1 1 61 + 1
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGUCACGUGGGUUGGGAUGAGCCAGUA
(((.(.((((..((((...((((((.........)))))).))))..)))).).))).... ( -24.20)
>consensus
GGCGCCUCCUCUCCUAGUGGUGACCCCUACCAAAGGUCACGUGGGUUGGGAUGAGCCAGUA
(((.(.((((..((((...((((((.........)))))).))))..)))).).))).... (-22.17 = -22.50 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:47:43 2007