Locus 3

Sequence ID pao_1
Location 648,796 – 648,864
Length 68
Max. P 0.933202
window5

overview

Window 5

Location 648,796 – 648,864
Length 68
Sequences 6
Columns 69
Reading direction reverse
Mean pairwise identity 71.06
Mean single sequence MFE -19.92
Consensus MFE -14.73
Energy contribution -15.23
Covariance contribution 0.50
Combinations/Pair 1.08
Mean z-score -1.19
Structure conservation index 0.74
SVM decision value 1.23
SVM RNA-class probability 0.933202
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 648796 68 - 1
CGAACUAUUCUUUUCCUCAGGCCAUCC-AAAACAGGGGAGAGCCGGCACACCGGCUUCCGGGCCAUCGG
...................((((..((-......))(((.((((((....))))))))).))))..... ( -24.30)
>pau_1 1 68 - 1
CGAACUAUUCUUUUCCUCAGGCCAUCC-AAAACAGGGGAGAGCCGGCACACCGGCUUCCGGGCCAUCGG
...................((((..((-......))(((.((((((....))))))))).))))..... ( -24.30)
>pel_1 1 52 - 1
-----------------CAGGCCAUCCAAAAAAAGGGGAGAGCCGGUACACCGGCGUGCGGGUCAUCGG
-----------------..((((.(((.........)))..(((((....))))).....))))..... ( -18.20)
>pf5_1 1 54 - 1
CGAACUAUCCUUAGCCUCAGGCCAUCC-AAAUCAGGGGAGAGCCGGUACACCGGC--------------
.............(((...(((..(((-........)))..)))((....)))))-------------- ( -14.80)
>pfs_1 1 51 - 1
-----------------CAGGCCAUCC-GAAUCAGGGGAGAGCCGGUACACCGGCGUGCGGGUCAUCGG
-----------------..((((.(((-........)))..(((((....))))).....))))..... ( -19.20)
>ppk_1 1 52 - 1
---------------CUCAGGCCAUCC--AAAAAGGGGAGAGCCGGUACACCGGCGUGCGGGUCAUCGG
---------------....((((.(((--.......)))..(((((....))))).....))))..... ( -18.70)
>consensus
_______________CUCAGGCCAUCC_AAAACAGGGGAGAGCCGGUACACCGGCGUGCGGGUCAUCGG
...................((((.(((.........)))..(((((....))))).....))))..... (-14.73 = -15.23 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:45:32 2007