| Sequence ID | pao_1 |
|---|---|
| Location | 1,928,650 – 1,928,721 |
| Length | 71 |
| Max. P | 0.906237 |
| Location | 1,928,650 – 1,928,721 |
|---|---|
| Length | 71 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 91.78 |
| Mean single sequence MFE | -32.41 |
| Consensus MFE | -24.94 |
| Energy contribution | -25.44 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.49 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 1928650 71 + 1 UGGCGCAAACAAAAAAGGCGUCCCGCU-GUUGCC-AGC-AGGACGCCUUUGUCCAGGUCCCGUUCGGUCGGGAA (((.((((.......((((((((.(((-(....)-)))-.)))))))))))))))..(((((......))))). ( -33.01) >pau_1 1 71 + 1 UGGCGCAAACAAAAAAGGCGUCCCGCU-GUUGCC-AGC-AGGACGCCUUUGUCCAGGUCCCGUUCGGUCGGGAA (((.((((.......((((((((.(((-(....)-)))-.)))))))))))))))..(((((......))))). ( -33.01) >pfo_1 1 74 + 1 UGGCGCAAACAAAAAAGGCGUCCCGCCAGUUACCUAGCGAGGACGCCUUUGUCCUUGUCCCGUUCUCUCGGGAA .....(((.....(((((((((((((.((....)).))).))))))))))....)))(((((......))))). ( -31.20) >consensus UGGCGCAAACAAAAAAGGCGUCCCGCU_GUUGCC_AGC_AGGACGCCUUUGUCCAGGUCCCGUUCGGUCGGGAA .((.((((.......((((((((.(((((....)))))..))))))))))))))...(((((......))))). (-24.94 = -25.44 + 0.50)
| Location | 1,928,650 – 1,928,721 |
|---|---|
| Length | 71 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 91.78 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -34.39 |
| Energy contribution | -34.33 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.04 |
| Mean z-score | -5.34 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 1928650 71 - 1 UUCCCGACCGAACGGGACCUGGACAAAGGCGUCCU-GCU-GGCAAC-AGCGGGACGCCUUUUUUGUUUGCGCCA .(((((......)))))...(((((((((((((((-(((-(....)-))))))))))))...))))))...... ( -40.00) >pau_1 1 71 - 1 UUCCCGACCGAACGGGACCUGGACAAAGGCGUCCU-GCU-GGCAAC-AGCGGGACGCCUUUUUUGUUUGCGCCA .(((((......)))))...(((((((((((((((-(((-(....)-))))))))))))...))))))...... ( -40.00) >pfo_1 1 74 - 1 UUCCCGAGAGAACGGGACAAGGACAAAGGCGUCCUCGCUAGGUAACUGGCGGGACGCCUUUUUUGUUUGCGCCA .(((((......)))))...((((((((((((((.((((((....))))))))))))))...))))))...... ( -37.00) >consensus UUCCCGACCGAACGGGACCUGGACAAAGGCGUCCU_GCU_GGCAAC_AGCGGGACGCCUUUUUUGUUUGCGCCA .(((((......)))))...(((((((((((((((.(((((....))))))))))))))...))))))...... (-34.39 = -34.33 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:47:21 2007