Locus 21

Sequence ID pao_1
Location 991,217 – 991,335
Length 118
Max. P 0.948443
window77

overview

Window 7

Location 991,217 – 991,335
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 82.77
Mean single sequence MFE -37.72
Consensus MFE -31.95
Energy contribution -32.28
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.66
Structure conservation index 0.85
SVM decision value 1.38
SVM RNA-class probability 0.948443
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 991217 118 - 1
AUUCGAACCCCCGACACCCUUUUGAGGUGUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCACCUCUCCGCAACACGGGGCGCAUGAUACCCAUCUUUACCCCGUUUGCAAA
..(((......))).........((((((..((((((.....))))))..)....((((....)))))))))...((((.((((((.....(((....)))....))))))))))... ( -43.00)
>pau_1 1 118 - 1
AUUCGAACCCCCGACACCCUUUUGAGGUGUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCACCUCUCCGCAACACGGGGCGCAUGAUACCCAUCUUUACCCCGUUUGCAAA
..(((......))).........((((((..((((((.....))))))..)....((((....)))))))))...((((.((((((.....(((....)))....))))))))))... ( -43.00)
>pf5_1 1 88 - 1
AUUCGAACCCCCGACACCCUUUUGAGGUGUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCAGCUCUCCGCAACACGGGGCG------------------------------
........(((((((((((....).))))).........((.(((((((......((((....)))).)))))))))....)))))..------------------------------ ( -37.30)
>pfo_1 1 88 - 1
AUUCGAACCCCCGACACCCUUUUGAGGUGUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCAGCUCUCCGCAACACGGGGCG------------------------------
........(((((((((((....).))))).........((.(((((((......((((....)))).)))))))))....)))))..------------------------------ ( -37.30)
>pfs_1 1 88 - 1
AUUCGAACCCCCGACACCCUUUUGAGGUGUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCAGCUCUCCGCAACACGGGGCG------------------------------
........(((((((((((....).))))).........((.(((((((......((((....)))).)))))))))....)))))..------------------------------ ( -37.30)
>ppk_1 1 88 - 1
AUUCGAACCCCCGAUACCCUUAUGAGGUAUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCACCUCACCGCAACACGAGGCG------------------------------
..(((......)))........((((((...((((((.....)))))).......((((....)))))))))).(((........)))------------------------------ ( -28.40)
>consensus
AUUCGAACCCCCGACACCCUUUUGAGGUGUACUCCCUUAGCAGGGGAGCGCCUUCGGCCACUCGGCCACCUCUCCGCAACACGGGGCG______________________________
........(((((..........((((((..((((((.....)))))))))))).((((....))))..............)))))................................ (-31.95 = -32.28 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:47:10 2007