Locus 19

Sequence ID pao_1
Location 797,721 – 797,805
Length 84
Max. P 0.995874
window74 window75

overview

Window 4

Location 797,721 – 797,805
Length 84
Sequences 3
Columns 84
Reading direction forward
Mean pairwise identity 93.65
Mean single sequence MFE -35.30
Consensus MFE -34.17
Energy contribution -33.40
Covariance contribution -0.77
Combinations/Pair 1.12
Mean z-score -2.73
Structure conservation index 0.97
SVM decision value 2.06
SVM RNA-class probability 0.986987
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 797721 84 + 1
UGGAGCGGGCGAAGGGAAUCGAACCCUCGUCAUGAGCUUGGGAAGCUCAGGUAAUGCCAUUAUACGACGCCCGCUCGGACGGCU
..((((((((((.(((.......)))))(((.((((((.....))))))((.....)).......)))))))))))........ ( -37.10)
>pau_1 1 84 + 1
UGGAGCGGGCGAAGGGAAUCGAACCCUCGUCAUGAGCUUGGGAAGCUCAGGUAAUGCCAUUAUACGACGCCCGCUCGGACGGCU
..((((((((((.(((.......)))))(((.((((((.....))))))((.....)).......)))))))))))........ ( -37.10)
>pf5_1 1 84 + 1
UGGAGCGGGUGAAGGGAAUCGAACCCUCGUUAUCAGCUUGGGAAGCUGGAGUAAUGCCAUUAUACGACACCCGCUCGAACGGCU
..(((((((((.((((.......))))(((((((((((.....)))))..))))))...........)))))))))........ ( -31.70)
>consensus
UGGAGCGGGCGAAGGGAAUCGAACCCUCGUCAUGAGCUUGGGAAGCUCAGGUAAUGCCAUUAUACGACGCCCGCUCGGACGGCU
..(((((((((..(((.......)))((((..((((((.....))))))((.....)).....)))))))))))))........ (-34.17 = -33.40 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 797,721 – 797,805
Length 84
Sequences 3
Columns 84
Reading direction reverse
Mean pairwise identity 93.65
Mean single sequence MFE -34.10
Consensus MFE -33.77
Energy contribution -33.00
Covariance contribution -0.77
Combinations/Pair 1.12
Mean z-score -3.27
Structure conservation index 0.99
SVM decision value 2.63
SVM RNA-class probability 0.995874
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 797721 84 - 1
AGCCGUCCGAGCGGGCGUCGUAUAAUGGCAUUACCUGAGCUUCCCAAGCUCAUGACGAGGGUUCGAUUCCCUUCGCCCGCUCCA
........(((((((((((((.....((.....)).(((((.....))))))))))(((((........))))))))))))).. ( -36.30)
>pau_1 1 84 - 1
AGCCGUCCGAGCGGGCGUCGUAUAAUGGCAUUACCUGAGCUUCCCAAGCUCAUGACGAGGGUUCGAUUCCCUUCGCCCGCUCCA
........(((((((((((((.....((.....)).(((((.....))))))))))(((((........))))))))))))).. ( -36.30)
>pf5_1 1 84 - 1
AGCCGUUCGAGCGGGUGUCGUAUAAUGGCAUUACUCCAGCUUCCCAAGCUGAUAACGAGGGUUCGAUUCCCUUCACCCGCUCCA
........(((((((((...................(((((.....))))).....(((((.......)))))))))))))).. ( -29.70)
>consensus
AGCCGUCCGAGCGGGCGUCGUAUAAUGGCAUUACCUGAGCUUCCCAAGCUCAUGACGAGGGUUCGAUUCCCUUCGCCCGCUCCA
........(((((((((((((.....((.....)).(((((.....))))))))))(((((........))))))))))))).. (-33.77 = -33.00 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:47:07 2007