Locus 18

Sequence ID pao_1
Location 727,133 – 727,253
Length 120
Max. P 0.981402
window73

overview

Window 3

Location 727,133 – 727,253
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.78
Mean single sequence MFE -38.02
Consensus MFE -36.47
Energy contribution -36.50
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -1.37
Structure conservation index 0.96
SVM decision value 1.89
SVM RNA-class probability 0.981402
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 727133 120 - 1
CUUGACGAUGACCUACUCUCACAUGGGGAGACCCCACACUACCAUCGGCGAUGCGUCGUUUCACUUCUGAGUUCGGGAAGGGAUCAGGUGGUUCCAACGCUCUAUGAUCGUCAAGCAAUU
(((((((((.((((...((((...(((....)))...........(((((...))))).........))))...)))..((((((....)))))).........).)))))))))..... ( -37.30)
>pf5_1 2 120 - 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUUCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAACGCUCUAUGGUCGUCAAGAAAUU
((((((((................(((....))).......((((.((((..............(((((....)))))(((((((....))))))).))).).))))))))))))..... ( -38.20)
>pfo_1 4 120 - 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUUCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAACGCUCUAUGGUCGUCAAGAAAUU
((((((((................(((....))).......((((.((((..............(((((....)))))(((((((....))))))).))).).))))))))))))..... ( -38.20)
>ppk_1 7 120 - 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUACUGAGUUCGGGAUGGGAUCAGGUGGUUCCAAUGCUCUAUGGUCGUCAAGAAAUU
(((((((((.((((...((((...(((....)))............(((((....))))).......))))...))).(((((((....)))))))........).)))))))))..... ( -37.70)
>pss_1 7 120 - 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUACACCGUUUCACUGCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAAUGCUCUAUGGUCGUCAAGAAAUU
((((((((................(((....))).......((((.((((.....(((.((((....))))..)))..(((((((....))))))).))).).))))))))))))..... ( -38.40)
>pst_1 7 120 - 1
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUACAUCGUUUCACUGCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAAUGCUCUAUGGUCGUCAAGAAAUU
(((((((((.((((...((((((.(((....)))............(((((....)))))....)).))))...))).(((((((....)))))))........).)))))))))..... ( -38.30)
>consensus
CUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUUCUGAGUUCGGGAUGGGAUCAGGUGGUUCCAACGCUCUAUGGUCGUCAAGAAAUU
(((((((((.((((...((((...(((....)))............((((......)))).......))))...))).(((((((....)))))))........).)))))))))..... (-36.47 = -36.50 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:47:04 2007