Locus 16

Sequence ID pao_1
Location 726,164 – 726,284
Length 120
Max. P 0.567275
window61

overview

Window 1

Location 726,164 – 726,284
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.50
Mean single sequence MFE -37.48
Consensus MFE -37.67
Energy contribution -36.03
Covariance contribution -1.63
Combinations/Pair 1.18
Mean z-score -0.61
Structure conservation index 1.00
SVM decision value 0.07
SVM RNA-class probability 0.567275
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 726164 120 + 1
UUACUGUAGCUUUGCACUGGACUUUGAGCCUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGACGCCAGUUCGCGUGGAGCCAUCCUUGAAAUACCACCCUGGCAUGCUUGAGGU
..(((..(((..(((...((((((....(((((....)))))..))))(((((((((....((((((((....)))))))).))))).))))...........))..))).)))...))) ( -42.40)
>pel_1 2119 120 + 1
UUACUAUAGCUUUGCACUGGACUUUGAGCUUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGGGGACGCCAGUUCUCAUGGAGCCAUCCUUGAAAUACCACCCUGGCAACCUUGAGGU
...(((..((...))..)))((((..((.(((((.(.((.((.((...(((((((((....((((((((....)))))))).))))).)))).....)))))).).))))).))..)))) ( -37.60)
>pf5_1 2116 120 + 1
UUACUAUAGCUUUGCACUGGACUUUGAAUUUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGAACGCCAGUUUGCGUGGAGCCAUCCUUGAAAUACCACCCUGGCAACUUUGAGGU
...(((..((...))..)))((((..((.(((((.(.((.((.((...(((((((((....(((..(((....)))..))).))))).)))).....)))))).).))))).))..)))) ( -35.60)
>pfo_1 2117 120 + 1
UUACUAUAGCUUUGCACUGGACUUUGAAUUUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGACGCCAGUUCGCGUGGAGCCAUCCUUGAAAUACCACCCUGGCAACUUUGAGGU
...(((..((...))..)))((((..((.(((((.(.((.((.((...(((((((((....((((((((....)))))))).))))).)))).....)))))).).))))).))..)))) ( -37.50)
>ppk_1 2119 120 + 1
UUACUAUAGCUUUGCACUGGACUUUGAAUUUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGGGGACGCCAGUUCUCAUGGAGCCAUCCUUGAAAUACCACCCUGGCAACUUUGAGGU
...(((..((...))..)))((((..((.(((((.(.((.((.((...(((((((((....((((((((....)))))))).))))).)))).....)))))).).))))).))..)))) ( -35.80)
>pst_1 2115 120 + 1
UUACUAUAGCUUUGCACUGGACUUUGAAUUUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGACGCCAGUCUGCGUGGAGCCAACCUUGAAAUACCACCCUGGCAACUUUGAGGU
...(((..((...))..)))((((..((.(((((.(((((....((((....(((((....(((..(((....)))..))).))))).)))).....)).)))...))))).))..)))) ( -36.00)
>consensus
UUACUAUAGCUUUGCACUGGACUUUGAAUUUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGACGCCAGUUCGCGUGGAGCCAUCCUUGAAAUACCACCCUGGCAACUUUGAGGU
...(((..((...))..)))((((..((.(((((.(.((.((.((...(((((((((....((((((((....)))))))).))))).)))).....)))))).).))))).))..)))) (-37.67 = -36.03 +  -1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:46:48 2007