Locus 115

Sequence ID pao_1
Location 6,051,360 – 6,051,416
Length 56
Max. P 0.500000
window464

overview

Window 4

Location 6,051,360 – 6,051,416
Length 56
Sequences 4
Columns 56
Reading direction forward
Mean pairwise identity 92.26
Mean single sequence MFE -9.98
Consensus MFE -10.12
Energy contribution -10.62
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.13
Structure conservation index 1.02
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>pao_1 6051360 56 + 1
UUGGUGGCCAGUCUAUUUUGUUUUUAUUGAACGUUCAAUCAACUAAGAAUAAGCUC
((((...)))).....((((((((((((((........)))).))))))))))... (  -6.90)
>pau_1 1 56 + 1
UUGGUGGCCAGUCUAUUUUGUUUUUAUUGAACGUUCAAUCAACUAAGAAUAAGCUC
((((...)))).....((((((((((((((........)))).))))))))))... (  -6.90)
>pel_1 1 51 + 1
-----GGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAAUAAAGAAUAAGCUC
-----....((..((((((...((((((((....))))))))...))))))..)). ( -13.40)
>pfs_1 1 56 + 1
UUGGUGGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAACAAAGAAUAAGCUC
.........((..((((((...((((((((....))))))))...))))))..)). ( -12.70)
>consensus
UUGGUGGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAACAAAGAAUAAGCUC
.........((..((((((...((((((((....))))))))...))))))..)). (-10.12 = -10.62 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:55:45 2007