Locus 110

Sequence ID pao_1
Location 6,042,964 – 6,043,044
Length 80
Max. P 0.946276
window429

overview

Window 9

Location 6,042,964 – 6,043,044
Length 80
Sequences 6
Columns 80
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -31.77
Consensus MFE -32.35
Energy contribution -31.52
Covariance contribution -0.83
Combinations/Pair 1.14
Mean z-score -0.91
Structure conservation index 1.02
SVM decision value 1.36
SVM RNA-class probability 0.946276
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6042964 80 - 1
AUACGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGGAGUUCGAUCCUCCUUGGCUCCACCA
....(((((((..((((........))))((.(((...))).))((((((((........)).))))))))))))).... ( -32.60)
>pf5_1 1 76 - 1
----GGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCA
----(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... ( -31.80)
>pfs_1 1 80 - 1
AUACGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAACGGUUCGAUCCCGUUUGGCUCCACCA
....(((((((.(((...)))((((((.(.(((((.......))))).).))..((...)).))))...))))))).... ( -29.90)
>ppk_1 1 80 - 1
AUACGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCA
....(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... ( -32.10)
>psp_1 1 80 - 1
AUACGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCA
....(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... ( -32.10)
>pss_1 1 80 - 1
AUACGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCA
....(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... ( -32.10)
>consensus
AUACGGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUUGGCUCCACCA
....(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... (-32.35 = -31.52 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:54:59 2007