Locus 108

Sequence ID pao_1
Location 6,042,344 – 6,042,464
Length 120
Max. P 0.990727
window423

overview

Window 3

Location 6,042,344 – 6,042,464
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.06
Mean single sequence MFE -36.88
Consensus MFE -39.58
Energy contribution -35.37
Covariance contribution -4.21
Combinations/Pair 1.53
Mean z-score -1.27
Structure conservation index 1.07
SVM decision value 2.23
SVM RNA-class probability 0.990727
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6042344 120 - 1
CUUCAUUGAUUUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACGCGAAAGGAUCUUUGAAGUGAAAUCGAGUAGGACGGAGCACGAGAAACUUUGUCUGAAC
(((((..((((((.((((..(((.((....)).)))..)...(.((((....)))))...)))...))))))..)))))............((((((((.........)))))))).... ( -35.50)
>pel_1 2519 120 - 1
CUGGUUUGAGAUUAGUGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACACGAAAAUCUCUUGCCAGUGAAAUCGAGUAGGACGGAGCACGAGAAACUUUGUCUGAAC
(((((..((((((.((((..(((.((....)).)))..)...(.((((....)))))...)))...))))))..)))))............((((((((.........)))))))).... ( -39.30)
>pfo_1 2517 120 - 1
UGGCUUUGAGAUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCUGUACGCGAAAGUCUCUUAGUCAUGAAAUCGAGUAGGACGGAGCACGAGAAACUUUGUCUGAAU
(((((..((((((.((((..(((.((....)).)))..).....((((....))))....)))...))))))..)))))............((((((((.........)))))))).... ( -38.30)
>ppk_1 2519 120 - 1
UUGACUUGAGAUUAGUGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACACGAAAAUCUCUUGUCAAUGAAAUCGAGUAGGACGGAGCACGAGAAACUUUGUCUGAAU
(((((..((((((.((((..(((.((....)).)))..)...(.((((....)))))...)))...))))))..)))))............((((((((.........)))))))).... ( -37.10)
>psp_1 2516 120 - 1
UUGUAUUGAGAUUAGCGGAACGUUCUGGAAAGGACGGCCAUAGUGGGUGAUAGCCCUGUACGCGAAAAUCCCUUUGCAAUGAAAUCGAGUAGGACGGGGCACGAGAAACCUUGUCUGAAU
(((((..(.((((.((((..((((((....))))))..).....((((....))))....)))...)))).)..)))))............((((((((.........)))))))).... ( -35.30)
>pss_1 2517 120 - 1
UUGUAUUGAGAUUAGCGGAACACUCUGGAAAGGGUGGCCAUAGUGGGUGAUAGCCCUGUACGCGAAAAUCCCUUUGCAAUGAAAUCGAGUAGGACGGGGCACGAGAAACCUUGUCUGAAU
(((((..(.((((.((((..((((((....))))))..).....((((....))))....)))...)))).)..)))))............((((((((.........)))))))).... ( -35.80)
>consensus
UUGCAUUGAGAUUAGCGGAACGCUCUGGAAAGUGCGGCCAUAGUGGGUGAUAGCCCCGUACGCGAAAAUCUCUUUGCAAUGAAAUCGAGUAGGACGGAGCACGAGAAACUUUGUCUGAAU
(((((..((((((.((((..(((.((....)).)))..).....((((....))))....)))...))))))..)))))............((((((((.........)))))))).... (-39.58 = -35.37 +  -4.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:54:50 2007