Locus 105

Sequence ID pao_1
Location 6,040,788 – 6,041,148
Length 360
Max. P 0.999933
window392 window393 window394 window395 window396 window397 window398

overview

Window 2

Location 6,040,788 – 6,040,908
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.50
Mean single sequence MFE -38.80
Consensus MFE -38.80
Energy contribution -38.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.75
Structure conservation index 1.00
SVM decision value 0.57
SVM RNA-class probability 0.785287
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6040788 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -39.70)
>pf5_1 958 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -37.90)
>pfo_1 961 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -37.90)
>pfs_1 961 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -37.90)
>pss_1 958 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -39.70)
>pst_1 958 120 - 1
CGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. ( -39.70)
>consensus
CGGAAGGUUAAUUGAUGGGGUUAGCGAAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU
.((((...........((((((.((....))..))))))...(((..((((((.....))).((((((.......))))))....)))..)))..))))..((((((.....)))))).. (-38.80 = -38.80 +   0.00)

alignment

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secondary structure

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dotplot

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Window 3

Location 6,040,828 – 6,040,948
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.50
Mean single sequence MFE -47.60
Consensus MFE -47.60
Energy contribution -47.60
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.31
Structure conservation index 1.00
SVM decision value 4.64
SVM RNA-class probability 0.999933
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6040828 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -48.50)
>pf5_1 998 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -46.70)
>pfo_1 1001 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -46.70)
>pfs_1 1001 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -46.70)
>pss_1 998 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -48.50)
>pst_1 998 120 - 1
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. ( -48.50)
>consensus
CACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGAAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGU
(((....)))..(((....(((...(((.(((((...((((((..((((..(((((((((((.((....))..))))))..)))))))))))))))...))))).))).)))...))).. (-47.60 = -47.60 +   0.00)

alignment

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secondary structure

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dotplot

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Window 4

Location 6,040,868 – 6,040,988
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.50
Mean single sequence MFE -38.70
Consensus MFE -38.10
Energy contribution -38.10
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.83
Structure conservation index 0.98
SVM decision value 0.60
SVM RNA-class probability 0.795175
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6040868 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUU
((((((((...(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..)))).))))..)).... ( -40.10)
>pf5_1 1038 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUU
...((((((..(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..))...)))..))).... ( -37.30)
>pfo_1 1041 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUU
...((((((..(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..))...)))..))).... ( -37.30)
>pfs_1 1041 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCUAACGCGAAGCUCUU
...((((((..(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..))...)))..))).... ( -37.30)
>pss_1 1038 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUU
((((((((...(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..)))).))))..)).... ( -40.10)
>pst_1 1038 120 - 1
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUU
((((((((...(((((.....)))))..((((((((....(((....)))......))))))))...((..((((.(((((....)))......)).))))..)))).))))..)).... ( -40.10)
>consensus
GCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGAAAGCGAAGCUCUU
(((((.(((..(((((.....)))))..((((((((....(((....)))......))))))))..)))..))..)))(((....)))........((((((.((....))..)))))). (-38.10 = -38.10 +   0.00)

alignment

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secondary structure

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dotplot

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Window 5

Location 6,040,948 – 6,041,068
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.06
Mean single sequence MFE -40.85
Consensus MFE -40.83
Energy contribution -39.55
Covariance contribution -1.28
Combinations/Pair 1.18
Mean z-score -0.99
Structure conservation index 1.00
SVM decision value 1.33
SVM RNA-class probability 0.942909
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6040948 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGAAGGAUUUACUCCGUAAGCUCUGGCUGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))((((((((((((...(((.....)))....)))))))))))).........((((..((((....(((((.....)))))))))..)))).... ( -43.10)
>pf5_1 1118 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -37.70)
>pfs_1 1121 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -37.70)
>ppk_1 1121 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGCGAGGGUGAAGGACUUGCUCCGUAAGCCCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -43.30)
>pss_1 1118 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGGAGGUGAAGCAUUUACUGCGUAAGCCCCUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((..(.(((...(((.....)))....))).)..))))).........((((..((((....(((((.....)))))))))..)))).... ( -40.30)
>pst_1 1118 120 - 1
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGCAUUUACUGCGUAAGCCCACGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... ( -43.00)
>consensus
GGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUACUCCGUAAGCCCAUGCCGGUCGAAGAUACCAGGCCGCUGCGACUGUUUAUUAAAAACACAGCACUCUGCAAA
.(((((....(....).....)))))(((((((.((((...(((.....)))....)))).))))))).........((((..((((....(((((.....)))))))))..)))).... (-40.83 = -39.55 +  -1.28)

alignment

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secondary structure

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dotplot

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Window 6

Location 6,040,988 – 6,041,108
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.06
Mean single sequence MFE -43.45
Consensus MFE -43.42
Energy contribution -42.15
Covariance contribution -1.27
Combinations/Pair 1.20
Mean z-score -1.84
Structure conservation index 1.00
SVM decision value 3.87
SVM RNA-class probability 0.999673
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6040988 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGAAGGAUUUACUCCGUAAGCUCUGGCUGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))((((((((((((...(((.....)))....))))))))))))........)).. ( -45.70)
>pf5_1 1158 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -40.30)
>pfs_1 1161 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUGCUCCGUAAGCUCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -40.30)
>ppk_1 1161 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCGAGGGUGAAGGACUUGCUCCGUAAGCCCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -45.90)
>pss_1 1158 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGGAGGUGAAGCAUUUACUGCGUAAGCCCCUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((..(.(((...(((.....)))....))).)..)))))........)).. ( -42.90)
>pst_1 1158 120 - 1
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGCAUUUACUGCGUAAGCCCACGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. ( -45.60)
>consensus
AGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGAAGGACUUACUCCGUAAGCCCAUGCCGGUCGAAGAUACCAG
...((((((((....))))))))..((..............(((((....(....).....)))))(((((((.((((...(((.....)))....)))).)))))))........)).. (-43.42 = -42.15 +  -1.27)

alignment

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secondary structure

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dotplot

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Window 7

Location 6,041,028 – 6,041,148
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -35.02
Consensus MFE -34.55
Energy contribution -34.05
Covariance contribution -0.50
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.99
SVM decision value 4.56
SVM RNA-class probability 0.999920
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6041028 120 + 1
UCACCCUAGCCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCGACCACCUGUGUCGGUUUGGGGUAC
..((((((((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..))).........((((((....).)))))..)))))).. ( -38.60)
>pel_1 1201 120 + 1
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCUAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -34.70)
>pfs_1 1201 120 + 1
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -34.30)
>ppk_1 1201 120 + 1
UCACCCUCGCCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCUAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -35.00)
>psp_1 1198 120 + 1
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -34.30)
>pss_1 1198 120 + 1
UCACCUCCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. ( -33.20)
>consensus
UCACCCUCACCGGCGCACCUUCUCCCGAAGUUACGGUGCCAUUUUGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACCCAACCACCUGUGUCGGUUUGGGGUAC
..(((((.((((((((..........((((..(((((........)))..))..))))....(((....)))..)))))..((((.....))))..............)))..))))).. (-34.55 = -34.05 +  -0.50)

alignment

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secondary structure

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dotplot

Postscript

Window 8

Location 6,041,028 – 6,041,148
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.00
Mean single sequence MFE -40.53
Consensus MFE -38.68
Energy contribution -39.18
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.95
SVM decision value 2.94
SVM RNA-class probability 0.997849
Prediction RNA

Download alignment: ClustalW | MAF

>pao_1 6041028 120 - 1
GUACCCCAAACCGACACAGGUGGUCGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCUAGGGUGA
.(((((...(((......)))((((((((..((....((....((((((((....))))))))..))..))..))......(((((....(....).....))))).)))))).))))). ( -41.70)
>pel_1 1201 120 - 1
GUACCCCAAACCGACACAGGUGGUUAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...((((.(.((..((.(((((((.....))))....((((((((....)))))))).......))).))...))(((((....(....).....)))))).))))..))))). ( -41.10)
>pfs_1 1201 120 - 1
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...(((........(((((.((((.....))))....((((((((....))))))))....)))))(((......(((((....(....).....)))))))))))..))))). ( -40.90)
>ppk_1 1201 120 - 1
GUACCCCAAACCGACACAGGUGGUUAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGCGAGGGUGA
.((((((..(((......))).(((.((((.....))))..((((((((((....)))))))...................(((((....(....).....)))))))))))).))))). ( -39.00)
>psp_1 1198 120 - 1
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...(((........(((((.((((.....))))....((((((((....))))))))....)))))(((......(((((....(....).....)))))))))))..))))). ( -40.90)
>pss_1 1198 120 - 1
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGGAGGUGA
.(((((((..((..((((((((.((.((((.....)))).)).)))))(((....)))..)))..)).....(((......(((((....(....).....))))))))..))).)))). ( -39.60)
>consensus
GUACCCCAAACCGACACAGGUGGUUGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCGGUGAGGGUGA
.(((((...((((.(...((((....((((.....))))....((((((((....))))))))...................))))(((.((((....)))).)))).))))..))))). (-38.68 = -39.18 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:54:16 2007