| Sequence ID | pao_1 |
|---|---|
| Location | 5,809,970 – 5,810,048 |
| Length | 78 |
| Max. P | 0.999729 |
| Location | 5,809,970 – 5,810,048 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 97.18 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -29.00 |
| Energy contribution | -29.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.99 |
| SVM decision value | 3.96 |
| SVM RNA-class probability | 0.999729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 5809970 78 + 1 CGCCGGUAUAGCUCAGCUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGACUCCUGGUGCCGGCACCAU .(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))..... ( -29.10) >pau_1 1 78 + 1 CGCCGGUAUAGCUCAGCUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGACUCCUGGUGCCGGCACCAC .(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))..... ( -29.10) >pel_1 1 77 + 1 -GCCGGUAUAGCUCAGAUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGAUUCCUGGUGCCGGCACCAU -(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))..... ( -28.80) >pfo_1 1 78 + 1 CGCCGGUAUAGCUCAGAUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGAUUCCUGGUGCCGGCACCAU .(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))..... ( -29.10) >ppk_1 1 77 + 1 -GCCGGUAUAGCUCAGAUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGAUUCCUGGUGCCGGCACCAU -(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))..... ( -28.80) >pss_1 1 78 + 1 CGCCGGUAUAGCUCAGUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGACUCCUGGUGCCGGCACCAU .((((((((((.(((((((......))))))).)))).)))....((..(((((.......)))))..)))))..... ( -30.40) >consensus CGCCGGUAUAGCUCAGAUGGUAGAGCAACUGACUUGUAAUCAGUAGGUCCCGGGUUCGACUCCUGGUGCCGGCACCAU .(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))..... (-29.00 = -29.00 + 0.00)
| Location | 5,809,970 – 5,810,048 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 97.18 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -24.48 |
| Energy contribution | -24.48 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.979688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao_1 5809970 78 - 1 AUGGUGCCGGCACCAGGAGUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAGCUGAGCUAUACCGGCG .....(((((....(((..(((....)))..)))((((((.....)))))).((((........))))....))))). ( -24.80) >pau_1 1 78 - 1 GUGGUGCCGGCACCAGGAGUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAGCUGAGCUAUACCGGCG .....(((((....(((..(((....)))..)))((((((.....)))))).((((........))))....))))). ( -24.80) >pel_1 1 77 - 1 AUGGUGCCGGCACCAGGAAUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAUCUGAGCUAUACCGGC- .(((((....)))))..........((((.....((((((.....)))))).((((........))))....)))).- ( -24.50) >pfo_1 1 78 - 1 AUGGUGCCGGCACCAGGAAUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAUCUGAGCUAUACCGGCG .....(((((....(((..(((....)))..)))((((((.....)))))).((((........))))....))))). ( -25.30) >ppk_1 1 77 - 1 AUGGUGCCGGCACCAGGAAUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAUCUGAGCUAUACCGGC- .(((((....)))))..........((((.....((((((.....)))))).((((........))))....)))).- ( -24.50) >pss_1 1 78 - 1 AUGGUGCCGGCACCAGGAGUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAACUGAGCUAUACCGGCG .....(((((....(((..(((....)))..)))((((((.....)))))).((((........))))....))))). ( -24.80) >consensus AUGGUGCCGGCACCAGGAAUCGAACCCGGGACCUACUGAUUACAAGUCAGUUGCUCUACCAUCUGAGCUAUACCGGCG .(((((....)))))..........((((.....((((((.....)))))).((((........))))....)))).. (-24.48 = -24.48 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 11:53:41 2007