Sequence ID | Eco_1 |
---|---|
Location | 4,165,213 – 4,165,453 |
Length | 240 |
Max. P | 0.998023 |
Location | 4,165,213 – 4,165,333 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.06 |
Mean single sequence MFE | -39.67 |
Consensus MFE | -39.80 |
Energy contribution | -37.03 |
Covariance contribution | -2.76 |
Combinations/Pair | 1.25 |
Mean z-score | -1.12 |
Structure conservation index | 1.00 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4165213 120 + 1 AAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGC ...........(((..((((...((((.....))))(((.....)))))))..)))((((((((.((((((((((...((((.((......)).))))..))))))))))..)))))))) ( -40.90) >Hin_1 41 120 + 1 AAUACGGAGGGUGCGAGCGUUAAUCGGAAUAACUGGGCGUAAAGGGCACGCAGGCGGUUAUUUAAGUGAGGUGUGAAAGCCCCGGGCUUAACCUGGGAAUUGCAUUUCAGACUGGGUAAC ....(((.((((((((((.(((....(((((((((.((((.......))))...)))))))))...))).))((....))((((((.....))))))..))))))))....)))...... ( -34.70) >Sty_1 41 120 + 1 AAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUCUGUCAAGUCGGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUUCGAAACUGGCAGGC ...........(((..((((...((((.....))))(((.....)))))))..)))((((((((..(((((((((...((((.((......)).))))..)))))))))...)))))))) ( -43.40) >consensus AAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUUUGAAACUGGCAAGC ...........(((..((((...((((.....))))(((.....)))))))..)))((((((((..((((((((......((((((.....))))))....))))))))...)))))))) (-39.80 = -37.03 + -2.76)
Location | 4,165,253 – 4,165,373 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -40.16 |
Energy contribution | -38.07 |
Covariance contribution | -2.10 |
Combinations/Pair | 1.23 |
Mean z-score | -1.29 |
Structure conservation index | 0.97 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4165253 120 + 1 AAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGG ....((((((((((((((((((((.((((((((((...((((.((......)).))))..))))))))))..)))))))))...)))).......((((......))))..)))).))). ( -43.10) >Hin_1 81 120 + 1 AAAGGGCACGCAGGCGGUUAUUUAAGUGAGGUGUGAAAGCCCCGGGCUUAACCUGGGAAUUGCAUUUCAGACUGGGUAACUAGAGUACUUUAGGGAGGGGUAGAAUUCCACGUGUAGCGG ........((((.(((((((((((..(((((((..(....((((((.....))))))..)..)))))))...)))))))).............((((........)))).))).).))). ( -35.20) >Sty_1 81 120 + 1 AAAGCGCACGCAGGCGGUCUGUCAAGUCGGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUUCGAAACUGGCAGGCUUGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGG ....((((((((((((((((((((..(((((((((...((((.((......)).))))..)))))))))...)))))))))...)))).......((((......))))..)))).))). ( -45.60) >consensus AAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUUUGAAACUGGCAAGCUUGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGG ....((((((((((((((((((((..((((((((......((((((.....))))))....))))))))...)))))))))...))))........(((((...)))))..)))).))). (-40.16 = -38.07 + -2.10)
Location | 4,165,333 – 4,165,453 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -47.03 |
Consensus MFE | -47.61 |
Energy contribution | -45.40 |
Covariance contribution | -2.21 |
Combinations/Pair | 1.20 |
Mean z-score | -3.55 |
Structure conservation index | 1.01 |
SVM decision value | 2.99 |
SVM RNA-class probability | 0.998023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4165333 120 + 1 UUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCG ...((((((((..((((.((((...((((((((.(.(((......)))....).))))))))...))))(((.((....)).)))))))..))).)))))...........((....)). ( -51.30) >Hin_1 161 120 + 1 UAGAGUACUUUAGGGAGGGGUAGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAAUACCGAAGGCGAAGGCAGCCCCUUGGGAAUGUACUGACGCUCAUGUGCGAAAGCG ...((((((((((((.((((((...((((((((.(.(((......)))....).))))))))...))))....((....))..)))))))))...)))))...........((....)). ( -40.30) >Sty_1 161 120 + 1 UUGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAAAGACUGACGCUCAGGUGCGAAAGCG ...((((((((..((((.((((...((((((((.(.(((......)))....).))))))))...))))(((.((....)).)))))))..)).))))))...........((....)). ( -49.50) >consensus UUGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAAAGACUGACGCUCAGGUGCGAAAGCG ...((((((((...((((((((...((((((((.(.(((......)))....).))))))))...))))(((.((....)).)))))))..))).)))))...........((....)). (-47.61 = -45.40 + -2.21)
Location | 4,165,333 – 4,165,453 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -29.32 |
Energy contribution | -27.89 |
Covariance contribution | -1.44 |
Combinations/Pair | 1.19 |
Mean z-score | -1.75 |
Structure conservation index | 1.00 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4165333 120 - 1 CGCUUUCGCACCUGAGCGUCAGUCUUCGUCCAGGGGGCCGCCUUCGCCACCGGUAUUCCUCCAGAUCUCUACGCAUUUCACCGCUACACCUGGAAUUCUACCCCCCUCUACGAGACUCAA (((((........)))))..(((((.(((..(((((((.......)))...((((....(((((........((........)).....)))))....)))).))))..))))))))... ( -32.62) >Hin_1 161 120 - 1 CGCUUUCGCACAUGAGCGUCAGUACAUUCCCAAGGGGCUGCCUUCGCCUUCGGUAUUCCUCCACAUCUCUACGCAUUUCACCGCUACACGUGGAAUUCUACCCCUCCCUAAAGUACUCUA (((((........)))))..(((((.......(((((.((((.........))))....(((((........((........)).....)))))......))))).......)))))... ( -24.86) >Sty_1 161 120 - 1 CGCUUUCGCACCUGAGCGUCAGUCUUUGUCCAGGGGGCCGCCUUCGCCACCGGUAUUCCUCCAGAUCUCUACGCAUUUCACCGCUACACCUGGAAUUCUACCCCCCUCUACAAGACUCAA (((((........)))))..((((((.((..(((((((.......)))...((((....(((((........((........)).....)))))....)))).))))..))))))))... ( -30.82) >consensus CGCUUUCGCACCUGAGCGUCAGUCUUUGUCCAGGGGGCCGCCUUCGCCACCGGUAUUCCUCCAGAUCUCUACGCAUUUCACCGCUACACCUGGAAUUCUACCCCCCUCUACAAGACUCAA (((((........)))))..(((((.(((..(((((((.......)))...((((....(((((........((........)).....)))))....)))).))))..))))))))... (-29.32 = -27.89 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:59 2006