Locus 93

Sequence ID	Eco_1
Location	4,035,809 – 4,035,929
Length	120
Max. P	0.984250

overview

Window 3

Location	4,035,809 – 4,035,929
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	92.08
Mean single sequence MFE	-44.30
Consensus MFE	-42.95
Energy contribution	-42.08
Covariance contribution	-0.88
Combinations/Pair	1.33
Mean z-score	-2.11
Structure conservation index	0.97
SVM decision value	1.97
SVM RNA-class probability	0.984250
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4035809 120 + 1
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -44.40)
>Sfl_1 281 120 + 1
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUACUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.40)
>Sty_1 281 120 + 1
CCAGAGCCUGAAUCAGCAUGUGUGUUAGUGGAAGCGUCUGGAAAGGUGCGCGAUACAGGGUGACAGCCCCGUACACAAAAGCGCAUGUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((..((....))..))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.30)
>Ype_1 281 120 + 1
CCAGAGUCUGAAUCAGUUUGUGUGUUAGUGGAAGCGUCUGGAAAGUCGCACGGUACAGGGUGAUAGUCCCGUACACCAAAAUGCACAGGCUGUGAACUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((..(((..(((.((....)).)))...((((.(((.......))))))).))).)))))))))))))...((((...)))).)))).))...... ( -42.10)
>consensus
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... (-42.95 = -42.08 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:32 2006