Locus 91

Sequence ID Eco_1
Location 4,035,169 – 4,035,242
Length 73
Max. P 0.839826
window306

overview

Window 6

Location 4,035,169 – 4,035,242
Length 73
Sequences 4
Columns 73
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -20.60
Consensus MFE -17.12
Energy contribution -16.75
Covariance contribution -0.38
Combinations/Pair 1.07
Mean z-score -1.82
Structure conservation index 0.83
SVM decision value 0.75
SVM RNA-class probability 0.839826
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4035169 73 - 1
UUGGUAGGCCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA
..((((((..((.((((.......)))))).))).)))....((((((((........))).)))))...... ( -21.70)
>Hin_1 1 64 - 1
---------CUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA
---------.((.((((.......))))))....((((((.....)))))).((((.........)))).... ( -17.60)
>Lpn_1 1 60 - 1
-------------GUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGAUCUAACCAACUGAUCUACA
-------------((((.......))))......((((((.....)))))).((((.........)))).... ( -15.10)
>Ype_1 1 73 - 1
UUGGUGGGUCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA
..((((((((.(.((((.......))))))))).))))....((((((((........))).)))))...... ( -28.00)
>consensus
_________CUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA
.............((((.......))))......((((((.....)))))).((((.........)))).... (-17.12 = -16.75 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:25 2006