Sequence ID | Eco_1 |
---|---|
Location | 3,999,200 – 3,999,398 |
Length | 198 |
Max. P | 0.993205 |
Location | 3,999,200 – 3,999,320 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -32.69 |
Energy contribution | -32.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.99 |
Structure conservation index | 0.97 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3999200 120 + 1 GCGUAACAUGCGCGCACGAUCACUCUAAGAGGACAUUCGCCUUGGACACACCCAGUAGAUACUGGCUCACUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAG ((((.....)))).....((((....((((((......(((((((......(((((....)))))......((((((.....))))))......)))))))....))))))...)))).. ( -33.50) >Sfl_1 121 120 + 1 GCGUAACAUGCGCGCACGAUCACUCUAAGAGGACAUUCGCCUUGGACACACCCAGUAGAUACUGGCUCACUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAG ((((.....)))).....((((....((((((......(((((((......(((((....)))))......((((((.....))))))......)))))))....))))))...)))).. ( -33.50) >Sty_1 29 120 + 1 GCGUAACAUGCGCCCACGAUUACGCUAAGAGGACAUUCGCCUUGGACACACCCAGUAGAUACUGGCUCAUUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAG ((((.....)))).....((((.((.((((((......(((((((......(((((....)))))......((((((.....))))))......)))))))....)))))).)))))).. ( -34.40) >consensus GCGUAACAUGCGCGCACGAUCACUCUAAGAGGACAUUCGCCUUGGACACACCCAGUAGAUACUGGCUCACUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAG ((((.....)))).....((((....((((((......(((((((......(((((....)))))......((((((.....))))))......)))))))....))))))...)))).. (-32.69 = -32.47 + -0.22)
Location | 3,999,200 – 3,999,320 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -39.77 |
Consensus MFE | -38.99 |
Energy contribution | -38.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 0.98 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3999200 120 - 1 CUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAGUGAGCCAGUAUCUACUGGGUGUGUCCAAGGCGAAUGUCCUCUUAGAGUGAUCGUGCGCGCAUGUUACGC ......((...(((((((((((((.(((....((((((.....))))))....(.(((((....))))).)...))))))))...))))).)))...((((.((((....)))))))))) ( -39.10) >Sfl_1 121 120 - 1 CUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAGUGAGCCAGUAUCUACUGGGUGUGUCCAAGGCGAAUGUCCUCUUAGAGUGAUCGUGCGCGCAUGUUACGC ......((...(((((((((((((.(((....((((((.....))))))....(.(((((....))))).)...))))))))...))))).)))...((((.((((....)))))))))) ( -39.10) >Sty_1 29 120 - 1 CUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAAUGAGCCAGUAUCUACUGGGUGUGUCCAAGGCGAAUGUCCUCUUAGCGUAAUCGUGGGCGCAUGUUACGC ...........(((((((((((((.(((....((((((.....))))))....(.(((((....))))).)...))))))))...))))).))).((((((.((((....)))))))))) ( -41.10) >consensus CUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAGUGAGCCAGUAUCUACUGGGUGUGUCCAAGGCGAAUGUCCUCUUAGAGUGAUCGUGCGCGCAUGUUACGC ......((...(((((((((((((.(((....((((((.....))))))....(.(((((....))))).)...))))))))...))))).)))...((((.((((....)))))))))) (-38.99 = -38.77 + -0.22)
Location | 3,999,240 – 3,999,358 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -38.07 |
Consensus MFE | -37.96 |
Energy contribution | -37.96 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.31 |
Structure conservation index | 1.00 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3999240 118 + 1 CUUGGACACACCCAGUAGAUACUGGCUCACUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCU--CAAUUUUUCCCGUCGC ....(((....(((((....)))))......((((((.....)))))).((((.(((((((((((..........))))))))))).))))))).(((((..--...........))))) ( -38.12) >Sfl_1 161 118 + 1 CUUGGACACACCCAGUAGAUACUGGCUCACUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCU--CAAUUUUUCCCGUCGC ....(((....(((((....)))))......((((((.....)))))).((((.(((((((((((..........))))))))))).))))))).(((((..--...........))))) ( -38.12) >Sty_1 69 120 + 1 CUUGGACACACCCAGUAGAUACUGGCUCAUUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCUUUCAUUUUUUCCCGUCGC ....(((....(((((....)))))......((((((.....)))))).((((.(((((((((((..........))))))))))).))))))).(((((...............))))) ( -37.96) >consensus CUUGGACACACCCAGUAGAUACUGGCUCACUAUCCUGUCAUCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCU__CAAUUUUUCCCGUCGC ....(((....(((((....)))))......((((((.....)))))).((((.(((((((((((..........))))))))))).))))))).(((((...............))))) (-37.96 = -37.96 + 0.00)
Location | 3,999,240 – 3,999,358 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -43.09 |
Consensus MFE | -41.86 |
Energy contribution | -41.86 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.70 |
Structure conservation index | 0.97 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3999240 118 - 1 GCGACGGGAAAAAUUG--AGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAGUGAGCCAGUAUCUACUGGGUGUGUCCAAG (.((((.(........--...(((((..((((..(((((((((((..(.....).)))))))))))..))))((((((.....))))))))))).(((((....))))).).)))))... ( -43.70) >Sfl_1 161 118 - 1 GCGACGGGAAAAAUUG--AGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAGUGAGCCAGUAUCUACUGGGUGUGUCCAAG (.((((.(........--...(((((..((((..(((((((((((..(.....).)))))))))))..))))((((((.....))))))))))).(((((....))))).).)))))... ( -43.70) >Sty_1 69 120 - 1 GCGACGGGAAAAAAUGAAAGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAAUGAGCCAGUAUCUACUGGGUGUGUCCAAG (((((...............)))))...((((..(((((((((((..(.....).)))))))))))..))))((((((.....))))))....(.(((((....))))).)......... ( -41.86) >consensus GCGACGGGAAAAAUUG__AGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGAUGACAGGAUAGUGAGCCAGUAUCUACUGGGUGUGUCCAAG (((((...............)))))...((((..(((((((((((..(.....).)))))))))))..))))((((((.....))))))....(.(((((....))))).)......... (-41.86 = -41.86 + -0.00)
Location | 3,999,280 – 3,999,398 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -39.53 |
Consensus MFE | -39.25 |
Energy contribution | -39.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -3.63 |
Structure conservation index | 0.99 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3999280 118 + 1 UCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCU--CAAUUUUUCCCGUCGCGCUGAGUCAGGCUGUUUAAUGGUCUGAAACCCAAUUUGUU ..(((((.(((((.(((((((((((..........))))))))))).))))))).(((((..--...........))))).)))..(((((((((...)))))))))............. ( -40.02) >Sfl_1 201 118 + 1 UCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCU--CAAUUUUUCCCGUCGCGCUGAGUCAGGCUGUUUAAUGGUCUGAAACCCAAUUUGUU ..(((((.(((((.(((((((((((..........))))))))))).))))))).(((((..--...........))))).)))..(((((((((...)))))))))............. ( -40.02) >Sty_1 109 120 + 1 UCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCUUUCAUUUUUUCCCGUCGCGUUGAGUCAGGCUGUUUAAUGGUCUGAAACCCAAUUUGUU .....((.(((((.(((((((((((..........))))))))))).))))))).(((((...............)))))((((..(((((((((...)))))))))....))))..... ( -38.56) >consensus UCCAGGAUCAACUCCUAAGGCUAUCCCUUUUUGCUGAUAGCCUUAGCGGUUGUCAGCGACCU__CAAUUUUUCCCGUCGCGCUGAGUCAGGCUGUUUAAUGGUCUGAAACCCAAUUUGUU ..(((((.(((((.(((((((((((..........))))))))))).))))))).(((((...............))))).)))..(((((((((...)))))))))............. (-39.25 = -39.03 + -0.22)
Location | 3,999,280 – 3,999,398 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -34.59 |
Consensus MFE | -33.78 |
Energy contribution | -33.56 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.01 |
Structure conservation index | 0.98 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3999280 118 - 1 AACAAAUUGGGUUUCAGACCAUUAAACAGCCUGACUCAGCGCGACGGGAAAAAUUG--AGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGA ......(..((.....((((.((((....((((..((.....)))))).....)))--))))).....((((..(((((((((((..(.....).)))))))))))..))))..))..). ( -35.10) >Sfl_1 201 118 - 1 AACAAAUUGGGUUUCAGACCAUUAAACAGCCUGACUCAGCGCGACGGGAAAAAUUG--AGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGA ......(..((.....((((.((((....((((..((.....)))))).....)))--))))).....((((..(((((((((((..(.....).)))))))))))..))))..))..). ( -35.10) >Sty_1 109 120 - 1 AACAAAUUGGGUUUCAGACCAUUAAACAGCCUGACUCAACGCGACGGGAAAAAAUGAAAGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGA .......(((........)))........((.((.((((((((((...............))))).........(((((((((((..(.....).)))))))))))..)))))))..)). ( -33.56) >consensus AACAAAUUGGGUUUCAGACCAUUAAACAGCCUGACUCAGCGCGACGGGAAAAAUUG__AGGUCGCUGACAACCGCUAAGGCUAUCAGCAAAAAGGGAUAGCCUUAGGAGUUGAUCCUGGA .......(((........)))........((.((.((((((((((...............))))).........(((((((((((..(.....).)))))))))))..)))))))..)). (-33.78 = -33.56 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:12 2006