Locus 87

Sequence ID Eco_1
Location 3,988,954 – 3,989,044
Length 90
Max. P 0.638158
window284

overview

Window 4

Location 3,988,954 – 3,989,044
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 99.26
Mean single sequence MFE -21.80
Consensus MFE -21.80
Energy contribution -21.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 1.00
SVM decision value 0.22
SVM RNA-class probability 0.638158
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3988954 90 + 1
AACGGUGCUACACUUGUAUGUAGCGCAUCUUUCUUUACGGUCAAUCAGCAAGGUGUUAAAUUGAUCACGUUUUAGACCAUUUUUUCGUCG
((((((((((((......))))))))............(((((((.(((.....)))..))))))).))))...(((.........))). ( -21.60)
>Sfl_1 1 90 + 1
AACGGUGCUACACUUGUAUGUAGCGCAUCUUUCUUUACGGUCAAUCAGCAAGGUGUUAAAUUGAUCACGUUUUAGACCAUUUUUUCGUCG
((((((((((((......))))))))............(((((((.(((.....)))..))))))).))))...(((.........))). ( -21.60)
>Sty_1 1 90 + 1
AACGGUGCUACACUUGUAUGUAGCGCAUCUUUCUUUACGGUCAAUGAGCAAGGUGUUAAAUUGAUCACGUUUUAGACCAUUUUUUCGUCG
((((((((((((......))))))))............(((((((.(((.....)))..))))))).))))...(((.........))). ( -22.20)
>consensus
AACGGUGCUACACUUGUAUGUAGCGCAUCUUUCUUUACGGUCAAUCAGCAAGGUGUUAAAUUGAUCACGUUUUAGACCAUUUUUUCGUCG
((((((((((((......))))))))............(((((((.(((.....)))..))))))).))))...(((.........))). (-21.80 = -21.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:07 2006