Locus 86

Sequence ID Eco_1
Location 3,980,531 – 3,980,610
Length 79
Max. P 0.987827
window282 window283

overview

Window 2

Location 3,980,531 – 3,980,610
Length 79
Sequences 3
Columns 79
Reading direction forward
Mean pairwise identity 98.31
Mean single sequence MFE -30.20
Consensus MFE -30.20
Energy contribution -30.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.80
Structure conservation index 1.00
SVM decision value 2.09
SVM RNA-class probability 0.987827
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3980531 79 + 1
UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAU
.((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))).... ( -30.20)
>Hin_1 1 79 + 1
UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAU
.((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))).... ( -30.20)
>Ype_1 1 78 + 1
UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAGUCCCAUUAGCCACCCCA-
.((((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))))...- ( -30.20)
>consensus
UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAU
.((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))).... (-30.20 = -30.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 3,980,531 – 3,980,610
Length 79
Sequences 3
Columns 79
Reading direction reverse
Mean pairwise identity 98.31
Mean single sequence MFE -32.30
Consensus MFE -32.30
Energy contribution -32.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -4.66
Structure conservation index 1.00
SVM decision value 1.89
SVM RNA-class probability 0.981554
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3980531 79 - 1
AUGGGGUGGCUAAUGGGAUUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA
....((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). ( -32.30)
>Hin_1 1 79 - 1
AUGGGGUGGCUAAUGGGAUUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA
....((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). ( -32.30)
>Ype_1 1 78 - 1
-UGGGGUGGCUAAUGGGACUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA
-...((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). ( -32.30)
>consensus
AUGGGGUGGCUAAUGGGAUUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA
....((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). (-32.30 = -32.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:06 2006