Locus 77

Sequence ID Eco_1
Location 3,425,806 – 3,425,926
Length 120
Max. P 0.981670
window230

overview

Window 0

Location 3,425,806 – 3,425,926
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -40.88
Consensus MFE -40.06
Energy contribution -40.30
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.98
SVM decision value 1.89
SVM RNA-class probability 0.981670
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3425806 120 - 1
AGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAAC
......((((((...((.(((((.((..((((..((((....))))...))))........((.(((....))))))).))))).))((((.(((......)))))))))))))...... ( -42.30)
>Hin_1 566 120 - 1
AGCUAACGUGAUAAAUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAAC
......((((.....((.(((((.((..((((..((((....))))...))))........((.(((....))))))).))))).))((((.(((......)))))))..))))...... ( -38.50)
>Sfl_1 566 120 - 1
AGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAAC
......((((((...((.(((((.((..((((..((((....))))...))))........((.(((....))))))).))))).))((((.(((......)))))))))))))...... ( -42.30)
>Sty_1 566 120 - 1
AGCUAACGCGUUAAGUAGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAAC
......((((((......(((((.((..((((..((((....))))...))))........((.(((....))))))).)))))...((((.(((......)))))))))))))...... ( -39.00)
>Ype_1 567 120 - 1
AGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAAC
......((((((...((.(((((.((..((((..((((....))))...))))........((.(((....))))))).))))).))((((.(((......)))))))))))))...... ( -42.30)
>consensus
AGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAAC
......((((((...((.(((((.((..((((..((((....))))...))))........((.(((....))))))).))))).))((((.(((......)))))))))))))...... (-40.06 = -40.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:20 2006