Locus 75

Sequence ID	Eco_1
Location	3,425,241 – 3,425,401
Length	160
Max. P	0.999921

overview

Window 3

Location	3,425,241 – 3,425,361
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	96.67
Mean single sequence MFE	-44.38
Consensus MFE	-43.16
Energy contribution	-41.88
Covariance contribution	-1.28
Combinations/Pair	1.11
Mean z-score	-2.58
Structure conservation index	0.97
SVM decision value	4.56
SVM RNA-class probability	0.999921
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3425241 120 - 1
UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC
....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10)
>Hin_1 1 120 - 1
UGUACCAGAAGUAGAUAGCUUAACCUUUUGGAGGGCGUUUACCACGGUAUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC
....(((((((.((....))....)))))))..(((.((((((.(((((((...))).)))).)))))))))((((..(((((((((((((....))))))))).....))))..)))). ( -41.50)
>Sfl_1 1 120 - 1
UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC
....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10)
>Sty_1 1 120 - 1
UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC
....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10)
>Ype_1 1 120 - 1
UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC
....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10)
>consensus
UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC
.(((((.(..((((((.((((..((....)).))))))))))..))))))(((((((((((.......))))))........(((((((((....))))))))))))))........... (-43.16 = -41.88 +  -1.28)

alignment

secondary structure

dotplot

Window 4

Location	3,425,281 – 3,425,401
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	96.67
Mean single sequence MFE	-41.92
Consensus MFE	-43.20
Energy contribution	-41.92
Covariance contribution	-1.28
Combinations/Pair	1.11
Mean z-score	-1.32
Structure conservation index	1.03
SVM decision value	1.33
SVM RNA-class probability	0.942716
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3425281 120 - 1
GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG
((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50)
>Hin_1 41 120 - 1
GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGUACCAGAAGUAGAUAGCUUAACCUUUUGGAGGGCGUUUACCACGGUAUGAUUCAUGACUGGGGUGAAGUCGUAACAAG
((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -39.60)
>Sfl_1 41 120 - 1
GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG
((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50)
>Sty_1 41 120 - 1
GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG
((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50)
>Ype_1 41 120 - 1
GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG
((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50)
>consensus
GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG
((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ (-43.20 = -41.92 +  -1.28)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:15 2006