| Sequence ID | Eco_1 |
|---|---|
| Location | 3,425,097 – 3,425,170 |
| Length | 73 |
| Max. P | 0.817983 |
| Location | 3,425,097 – 3,425,170 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 88.07 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -17.18 |
| Energy contribution | -16.86 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3425097 73 + 1 UUGGUAGGCCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ..((((((..((.((((.......)))))).))).)))....((((((((........))).)))))...... ( -21.70) >Hin_1 1 64 + 1 ---------CUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ---------.((.((((.......))))))....((((((.....)))))).((((.........)))).... ( -17.60) >Lpn_1 1 60 + 1 -------------GUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGAUCUAACCAACUGAUCUACA -------------((((.......))))......((((((.....)))))).((((.........)))).... ( -15.10) >Sty_1 1 73 + 1 UUGGUAGGCCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ..((((((..((.((((.......)))))).))).)))....((((((((........))).)))))...... ( -21.70) >Ype_1 1 73 + 1 UUGGUGGGUCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ..((((((((.(.((((.......))))))))).))))....((((((((........))).)))))...... ( -28.00) >consensus UUGGU_GG_CUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA .............((((.......))))......((((((.....)))))).((((.........)))).... (-17.18 = -16.86 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:13 2006