Locus 73

Sequence ID Eco_1
Location 3,424,979 – 3,425,059
Length 80
Max. P 0.677572
window221

overview

Window 1

Location 3,424,979 – 3,425,059
Length 80
Sequences 6
Columns 80
Reading direction forward
Mean pairwise identity 86.00
Mean single sequence MFE -27.88
Consensus MFE -24.32
Energy contribution -24.85
Covariance contribution 0.53
Combinations/Pair 1.18
Mean z-score -1.59
Structure conservation index 0.87
SVM decision value 0.30
SVM RNA-class probability 0.677572
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3424979 80 + 1
AUGGUGGAGCUAUGCGGGAUCGAACCGCAGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAUAGCCCCAUA
...((((.(((((((((.......))))......(((((.......))))).((((........)))).))))).)))). ( -31.20)
>Hin_1 1 78 + 1
-UGGUGGAGAUAAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAUAUCCCCAU-
-(((.((((...(((((.......)))))...)))).((.(((...))).))((((........)))).......))).- ( -28.20)
>Lpn_1 1 78 + 1
AUGGUGGAGCUAGGCGGGAUCGAACCGCCGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAACCCCA--
.(((..((((..(((((.......))))).....(((((((...))))))).))))..))).................-- ( -29.20)
>Sfl_1 1 64 + 1
-------------GCGGGAUCGAACCGCUGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC---
-------------((((.......))))......(((((((...))))))).((((........)))).........--- ( -18.60)
>Sty_1 1 79 + 1
-UGGUGGAGCUAAGCGGGAUCGAACCGCUGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCCAUA
-..((((.(((((((((.......))))).....(((((((...))))))).((((........))))..)))).)))). ( -29.50)
>Ype_1 1 80 + 1
AUGGUGGAGCUAAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAUAGCCCCAUA
...((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))). ( -30.60)
>consensus
_UGGUGGAGCUAAGCGGGAUCGAACCGCUGACCUCCUGCAUGCAAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCCAU_
...((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))). (-24.32 = -24.85 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:12 2006