Locus 70

Sequence ID	Eco_1
Location	3,422,173 – 3,422,293
Length	120
Max. P	0.826453

overview

Window 3

Location	3,422,173 – 3,422,293
Length	120
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	97.50
Mean single sequence MFE	-48.12
Consensus MFE	-45.96
Energy contribution	-46.27
Covariance contribution	0.31
Combinations/Pair	1.03
Mean z-score	-1.92
Structure conservation index	0.96
SVM decision value	0.70
SVM RNA-class probability	0.826453
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3422173 120 - 1
UCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUGAUGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAG
...((((((((((((......)))))).))))))..(((....(((((.....))))).((((.((.(((....(((((((....))).))))...))).....)))))))))....... ( -48.80)
>Hin_1 161 120 - 1
UCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUGGAU
.((((((((((((((......)))))).)))))(((((.....))))).....)))(..((((.((.(((....(((((((....))).))))...))).....))))))..)....... ( -47.90)
>Sty_1 161 120 - 1
UCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAG
.((((((((((((((......)))))).)))))(((((.....))))).....)))(..((((.((.(((....(((((((....))).))))...))).....))))))..)....... ( -47.90)
>Ype_1 161 120 - 1
UCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUGGAA
.((((((((((((((......)))))).)))))(((((.....))))).....)))(..((((.((.(((....(((((((....))).))))...))).....))))))..)....... ( -47.90)
>consensus
UCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAG
.((((((((((((((......)))))).)))))(((((.....))))).....)))(..((((.((.(((....(((((((....))).))))...))).....))))))..)....... (-45.96 = -46.27 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:04 2006