Locus 7

Sequence ID Eco_1
Location 226,808 – 226,928
Length 120
Max. P 0.684098
window9

overview

Window 9

Location 226,808 – 226,928
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -39.80
Consensus MFE -39.80
Energy contribution -39.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 1.00
SVM decision value 0.31
SVM RNA-class probability 0.684098
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 226808 120 - 1
ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC
(((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80)
>Sfl_1 1063 120 - 1
ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC
(((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80)
>Sty_1 1065 120 - 1
ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC
(((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80)
>Ype_1 1062 120 - 1
ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC
(((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80)
>consensus
ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC
(((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... (-39.80 = -39.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:57 2006