Locus 69

Sequence ID Eco_1
Location 3,421,600 – 3,421,680
Length 80
Max. P 0.996944
window211 window212

overview

Window 1

Location 3,421,600 – 3,421,680
Length 80
Sequences 4
Columns 80
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -34.07
Consensus MFE -34.83
Energy contribution -34.08
Covariance contribution -0.75
Combinations/Pair 1.08
Mean z-score -4.70
Structure conservation index 1.02
SVM decision value 2.09
SVM RNA-class probability 0.987652
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3421600 80 + 1
AGUGGUGCUGAUACCCAGAGUCGAACUGGGGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCCAUAUCAGCAC
....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -33.40)
>Sfl_1 1 80 + 1
AGUGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC
....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -34.30)
>Sty_1 1 80 + 1
AGUGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC
....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -34.30)
>Ype_1 1 78 + 1
--UGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC
--..((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -34.30)
>consensus
AGUGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC
....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) (-34.83 = -34.08 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 3,421,600 – 3,421,680
Length 80
Sequences 4
Columns 80
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -35.20
Consensus MFE -35.95
Energy contribution -35.20
Covariance contribution -0.75
Combinations/Pair 1.08
Mean z-score -3.82
Structure conservation index 1.02
SVM decision value 2.77
SVM RNA-class probability 0.996944
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3421600 80 - 1
GUGCUGAUAUGGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCCCCAGUUCGACUCUGGGUAUCAGCACCACU
(((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... ( -34.60)
>Sfl_1 1 80 - 1
GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCACU
(((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... ( -35.40)
>Sty_1 1 80 - 1
GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCACU
(((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... ( -35.40)
>Ype_1 1 78 - 1
GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCA--
(((((((((..((((........)))).((((((.....)))))).....(((((.......))))))))))))))..-- ( -35.40)
>consensus
GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCACU
(((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... (-35.95 = -35.20 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:03 2006