Locus 67

Sequence ID Eco_1
Location 3,376,733 – 3,376,850
Length 117
Max. P 0.500000
window208

overview

Window 8

Location 3,376,733 – 3,376,850
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.60
Mean single sequence MFE -35.13
Consensus MFE -28.40
Energy contribution -29.40
Covariance contribution 1.00
Combinations/Pair 1.05
Mean z-score -1.96
Structure conservation index 0.81
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>Eco_1 3376733 117 - 1
ACUUCUCUAUAAUCCUGCGACCCCACGUUACAAGAAAGUUUUUUUCCCAAAACUUUUUGU-GUGCUGGCAUAGGCUAUUCGAAGGGGUAGGUUUGCCGGACU--UUGUCGUGUGAACCUC
............((.((((((.......((((((((((((((......)))))))))).)-)))((((((.((.((((((....)))))).))))))))...--..)))))).))..... ( -32.90)
>Sfl_1 40 117 - 1
ACUUCUCUAUAAUCCUGCGACCCCACGUUACAAGAAAGUUUUUUUCCCAAAACUUUUUGU-GUGCUGGCAUAGGCUAUUCGAAGGGGUAGGUUUGCCGGACU--UUGUCGUGUGAACCUC
............((.((((((.......((((((((((((((......)))))))))).)-)))((((((.((.((((((....)))))).))))))))...--..)))))).))..... ( -32.90)
>Ype_1 41 120 - 1
ACUUCUCUAUAAUCUUGCGACCCCACGUUACAACAAAGUUUUUUUCCCAAAAACUUUGAUAGUGCCAGCAUUGGCUAUUCGAAGGGGUAGGUUUGCUGGACUGAUGGUCGUGUGAGCCUC
............((.(((((((...........((((((((((.....)))))))))).((((.((((((..(.((((((....)))))).).))))))))))..))))))).))..... ( -39.60)
>consensus
ACUUCUCUAUAAUCCUGCGACCCCACGUUACAAGAAAGUUUUUUUCCCAAAACUUUUUGU_GUGCUGGCAUAGGCUAUUCGAAGGGGUAGGUUUGCCGGACU__UUGUCGUGUGAACCUC
............((.((((((..(((...((((.((((((((......)))))))))))).)))((((((.((.((((((....)))))).)))))))).......)))))).))..... (-28.40 = -29.40 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:59 2006