Locus 65

Sequence ID	Eco_1
Location	3,316,235 – 3,316,316
Length	81
Max. P	0.500000

overview

Window 3

Location	3,316,235 – 3,316,316
Length	81
Sequences	5
Columns	81
Reading direction	reverse
Mean pairwise identity	97.28
Mean single sequence MFE	-33.92
Consensus MFE	-32.40
Energy contribution	-32.40
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.09
Structure conservation index	0.96
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>Eco_1 3316235 81 - 1
CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
..((.((((((..((((.((...)).)))).(((((.......))))).....(((((.......)))))))))))..)). ( -33.30)
>Hin_1 1 81 - 1
CAGACGCGGGGUGGAGCAGCUUGGUAGCUCGUCGGGCUCAUAACCCGAAGGCCGUCGGUUCAAAUCCGGCCCCCGCAACCA
.....((((((.((.(.((((....))))).(((((.......)))))...))(((((.......)))))))))))..... ( -32.50)
>Sfl_1 1 81 - 1
CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
...(((.((((((((..((((.((..(((..(((((.......))))).)))..))))))....))).))))))))..... ( -34.10)
>Sty_1 1 81 - 1
CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
...(((.((((((((..((((.((..(((..(((((.......))))).)))..))))))....))).))))))))..... ( -34.10)
>Ype_1 1 81 - 1
CGGACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
.((..((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..))))))..)). ( -35.60)
>consensus
CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
.....((((((..((((.((...)).)))).(((((.......))))).....(((((.......)))))))))))..... (-32.40 = -32.40 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:55 2006