Locus 63

Sequence ID Eco_1
Location 3,305,942 – 3,306,062
Length 120
Max. P 0.904044
window198

overview

Window 8

Location 3,305,942 – 3,306,062
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -34.17
Consensus MFE -31.92
Energy contribution -31.70
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.28
Structure conservation index 0.93
SVM decision value 1.03
SVM RNA-class probability 0.904044
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3305942 120 - 1
CUGACGUACACAUCAGCCCGUAAUCUUUUUUGAUUGCCAUCACCUUAACGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCUGA
.(((((.(((((...((((((((((......))))))..((((((....))))))))))..)).))).)))))............((((....)))).......((((....)))).... ( -33.00)
>Sfl_1 9 120 - 1
CUGACGUACACAUCAGCCCGUAAUCUUUUUUGAUUGCCAUCACCUUAACGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCUGA
.(((((.(((((...((((((((((......))))))..((((((....))))))))))..)).))).)))))............((((....)))).......((((....)))).... ( -33.00)
>Sty_1 60 119 - 1
CUGACGAACAUAUCAGCCCGUAAUC-UUUUUGAUUGCCAUCACCUUCGCGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCAGA
.(((((((((.....((((((((((-.....))))))..((((((....)))))))))).....)))))))))............((((....)))).......((((....)))).... ( -36.50)
>consensus
CUGACGUACACAUCAGCCCGUAAUCUUUUUUGAUUGCCAUCACCUUAACGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCUGA
.(((((.(((((...((((((((((......))))))..((((((....))))))))))..)).))).)))))............((((....)))).......((((....)))).... (-31.92 = -31.70 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:51 2006