Locus 61

Sequence ID	Eco_1
Location	3,108,349 – 3,108,464
Length	115
Max. P	0.987023

overview

Window 4

Location	3,108,349 – 3,108,464
Length	115
Sequences	3
Columns	115
Reading direction	forward
Mean pairwise identity	96.52
Mean single sequence MFE	-47.30
Consensus MFE	-45.31
Energy contribution	-44.87
Covariance contribution	-0.44
Combinations/Pair	1.07
Mean z-score	-2.14
Structure conservation index	0.96
SVM decision value	1.05
SVM RNA-class probability	0.906141
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3108349 115 + 1
UUGACGAGACGAGGCGAAUCAGGUUUAAUGCGCCCCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA
.......((((.((((.((........)).)))).))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... ( -45.20)
>Sfl_1 1 115 + 1
UUGACGAGACGAGGCGAAUCAGGUUUAAUGCGCCCCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA
.......((((.((((.((........)).)))).))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... ( -45.20)
>Sty_1 1 115 + 1
UUGACGAAGCGAGGCGAUUACGGUUUAAUGCGCCUCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA
.......(((((((((((((.....)))).)))))))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... ( -51.50)
>consensus
UUGACGAGACGAGGCGAAUCAGGUUUAAUGCGCCCCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA
.......((((.((((..............)))).))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... (-45.31 = -44.87 +  -0.44)

alignment

secondary structure

dotplot

Window 5

Location	3,108,349 – 3,108,464
Length	115
Sequences	3
Columns	115
Reading direction	reverse
Mean pairwise identity	96.52
Mean single sequence MFE	-48.30
Consensus MFE	-45.75
Energy contribution	-46.53
Covariance contribution	0.78
Combinations/Pair	1.03
Mean z-score	-3.65
Structure conservation index	0.95
SVM decision value	2.06
SVM RNA-class probability	0.987023
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3108349 115 - 1
UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGGGGCGCAUUAAACCUGAUUCGCCUCGUCUCGUCAA
...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...))))))))((((((((.((((....)))).))))))))........ ( -48.60)
>Sfl_1 1 115 - 1
UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGGGGCGCAUUAAACCUGAUUCGCCUCGUCUCGUCAA
...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...))))))))((((((((.((((....)))).))))))))........ ( -48.60)
>Sty_1 1 115 - 1
UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGAGGCGCAUUAAACCGUAAUCGCCUCGCUUCGUCAA
...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...)))))))).(((((((.((((.....)))))))))))......... ( -47.70)
>consensus
UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGGGGCGCAUUAAACCUGAUUCGCCUCGUCUCGUCAA
...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...)))))))).(((((((.((((....)))).)))))))......... (-45.75 = -46.53 +   0.78)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:48 2006