| Sequence ID | Eco_1 |
|---|---|
| Location | 226,544 – 226,704 |
| Length | 160 |
| Max. P | 0.919122 |
| Location | 226,544 – 226,664 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -45.17 |
| Consensus MFE | -44.25 |
| Energy contribution | -43.81 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 226544 120 + 1 UGAAGCAUCCUAAGACCCCCAAUUGUGUAACUCCCCAUGGCUUGUAGCUAAAUAUAACCCUCGCAUACUCCGGGAGGUCAUUUGGGCGGGAAGGGUGCAGGCCGUCCAGCGGCCACGUCA ....(((((((....(((((((..(((...(((((...((...(((((..............)).))).)))))))..)))))))).))..))))))).(((((.....)))))...... ( -44.54) >Sfl_1 799 120 + 1 UGAAGCAUCCUAAGACCCCCAAUUGUGUAACUCCCCAUGGCUUGUAGCUAAAUAUAACCCUCGCAUACUCCGGGAGGUCAUUUGGGCGGGAAGGGUGCAGGCCGUCUAGCGGCCACGUCA ....(((((((....(((((((..(((...(((((...((...(((((..............)).))).)))))))..)))))))).))..))))))).(((((.....)))))...... ( -44.54) >Sty_1 801 120 + 1 UGAAGCAUCCUAAGACCCCCAAUUGUGUAACUCCCCAUGGCUUGUAGCUAAAUAUAACCCCCGCAUACUCCGGGAGGUCAUUUGGGCGGGAGGGGUGCUGGCCGUCUAGCGGCCACGUCA ...((((((((....(((((((.((............((((.....))))......(((((((.......)))).))))).))))).))..))))))))(((((.....)))))...... ( -45.80) >Ype_1 798 120 + 1 UGAAGCAUCCUAAGACCCCCAAUUGUGUAACUCCCCAUGGCUUGUAGCUAAAUAUAACCCCCGCAUAUUCCGGGAGGUCAUUUGGGCGGGAGGGGUGCUGGCCGUCCAGCGGCCAAGUCA ...((((((((....(((((((.((............((((.....))))......(((((((.......)))).))))).))))).))..))))))))(((((.....)))))...... ( -45.80) >consensus UGAAGCAUCCUAAGACCCCCAAUUGUGUAACUCCCCAUGGCUUGUAGCUAAAUAUAACCCCCGCAUACUCCGGGAGGUCAUUUGGGCGGGAAGGGUGCAGGCCGUCCAGCGGCCACGUCA ....(((((((....(((((((..(((...(((((...((...(((((..............)).))).)))))))..)))))))).))..))))))).(((((.....)))))...... (-44.25 = -43.81 + -0.44)
| Location | 226,584 – 226,704 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -42.62 |
| Consensus MFE | -40.67 |
| Energy contribution | -40.80 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 226584 120 + 1 CUUCUGGCGAUUCUGAACGCUGCAUCGGGGGAGAUUAACACCUAGGGCGCCAACGCCUCCUUGCAUAACUACGAUCGCUCAGCAUAUAGGUGAGCGGUCGAAACUUGAGAGUGCCGAAGA ((((.(((.(((((.((...((((..(((((.(.....).))).(((((....))))))).))))......((((((((((.(.....).))))))))))....)).)))))))))))). ( -45.10) >Sfl_1 839 120 + 1 CUUCUGGCGAUUCUGAACGCUGCAUCGGGGGAGAUUAACACCUAGGGCGCCAACGCCUUCUUGCAUAACUACGAUCGCUCAGCAUAUAGGUGAGCGGUCGAAACUUGAGAGUGCCGAAGA ((((.(((.(((((.((...((((..((((........).)))((((((....))))))..))))......((((((((((.(.....).))))))))))....)).)))))))))))). ( -44.80) >Sty_1 841 120 + 1 CUUCUGGCGAUUCUGAACGCCGCAUCGGGGGAGAUUAACACCUAGGGCGCCUACGCCUUCUUGCAUGACUACGAUCGCUCAGCAUAUAGGUGAGCGGUCGAAACUUGAGAGUGCCGAAGA ((((.(((.(((((.((....(((..((((........).)))((((((....))))))..))).......((((((((((.(.....).))))))))))....)).)))))))))))). ( -44.50) >Ype_1 838 120 + 1 CUUCUGGCGAUUCUGAACGCCGCAUCGAGGGAGAUUAACACCUAGGGCGCCUACGCCUCCUUGCAUGACUACGAUUGCUCAGCAUAUACGUGAGCGGUAGAAACUUGAGAGUGCCGAAGA ((((.(((.(((((.((((..(((((((((.((........)).(((((....)))))))))).))).)..))((((((((.(......)))))))))......)).)))))))))))). ( -36.10) >consensus CUUCUGGCGAUUCUGAACGCCGCAUCGGGGGAGAUUAACACCUAGGGCGCCAACGCCUCCUUGCAUAACUACGAUCGCUCAGCAUAUAGGUGAGCGGUCGAAACUUGAGAGUGCCGAAGA ((((.(((.(((((.((....(((...(((..........))).(((((....)))))...))).......((((((((((.(.....).))))))))))....)).)))))))))))). (-40.67 = -40.80 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:54 2006