Locus 52

Sequence ID Eco_1
Location 2,816,219 – 2,816,299
Length 80
Max. P 0.998689
window169 window170

overview

Window 9

Location 2,816,219 – 2,816,299
Length 80
Sequences 4
Columns 80
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -33.92
Consensus MFE -34.42
Energy contribution -33.30
Covariance contribution -1.12
Combinations/Pair 1.17
Mean z-score -3.10
Structure conservation index 1.01
SVM decision value 3.19
SVM RNA-class probability 0.998689
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2816219 80 + 1
AUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCAU
...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) ( -34.90)
>Hin_1 1 79 + 1
AUGGCGCACCCGAGAGGAUUCGAACCUCUGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGGUGCA-
.....((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))).- ( -32.70)
>Sty_1 1 80 + 1
AUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCAU
...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) ( -34.90)
>Ype_1 1 80 + 1
AUGGUGCACCCAGGAAGAUUCGAACUUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUAUGGGUGCAU
...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) ( -33.20)
>consensus
AUGGUGCACCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCAU
...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) (-34.42 = -33.30 +  -1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 2,816,219 – 2,816,299
Length 80
Sequences 4
Columns 80
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -30.55
Consensus MFE -32.29
Energy contribution -30.48
Covariance contribution -1.81
Combinations/Pair 1.20
Mean z-score -2.11
Structure conservation index 1.06
SVM decision value 2.25
SVM RNA-class probability 0.991045
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2816219 80 - 1
AUGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAU
.((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... ( -31.10)
>Hin_1 1 79 - 1
-UGCACCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCAGAGGUUCGAAUCCUCUCGGGUGCGCCAU
-.(((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))..... ( -29.80)
>Sty_1 1 80 - 1
AUGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAU
.((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... ( -31.10)
>Ype_1 1 80 - 1
AUGCACCCAUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAAGUUCGAAUCUUCCUGGGUGCACCAU
.((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... ( -30.20)
>consensus
AUGCACCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAU
.((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... (-32.29 = -30.48 +  -1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:28 2006